Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33950 517 / 0 ATOST1, P44, SRK2E, SNRK2-6, SnRK2.6, OST1 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) AT5G66880 476 / 2e-169 SNRK2-3, SNRK2.3, SRK2I SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) AT3G50500 458 / 2e-162 SPK-2-2, SNRK2-2, SNRK2.2, SRK2D SNF1-RELATED PROTEIN KINASE 2-2, SNF1-related protein kinase 2.2 (.1.2) AT1G10940 406 / 8e-142 ASK1, SNRK2-4, SNRK2.4, SRK2A SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) AT1G60940 404 / 7e-141 SNRK2-10, SNRK2.10, SRK2B SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) AT5G63650 400 / 2e-139 SNRK2-5, SNRK2.5, SRK2H SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1) AT5G08590 396 / 5e-138 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT1G78290 381 / 4e-132 SRK2C, SNRK2-8, SNRK2 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) AT4G40010 368 / 6e-127 SNRK2-7, SNRK2.7, SRK2F SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-7, SNF1-related protein kinase 2.7 (.1) AT2G23030 360 / 5e-124 SNRK2-9, SnRK2.9 SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-9, SNF1-related protein kinase 2.9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020997 [exp] 600 / 0 AT4G33950 637 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10027931 [exp] 516 / 0 AT4G33950 603 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10012050 [exp] 512 / 0 AT4G33950 553 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10009332 [exp] 484 / 1e-172 AT5G66880 610 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10019641 [exp] 476 / 4e-169 AT5G66880 577 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Lus10004382 [exp] 420 / 2e-147 AT4G33950 518 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10040179 [exp] 417 / 2e-146 AT4G33950 516 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Lus10001367 [exp] 409 / 1e-142 AT1G60940 599 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Lus10015464 [exp] 407 / 4e-142 AT1G60940 596 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G145500 [exp] 540 / 0 AT4G33950 624 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.009G106900 [exp] 531 / 0 AT4G33950 600 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.005G134400 [exp] 502 / 1e-179 AT5G66880 600 / 0.0 SUCROSE NONFERMENTING 1 \(SNF1\)-RELATED PROTEIN KINASE 2-3, sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 (.1) Potri.003G084100 [exp] 421 / 5e-148 AT4G33950 527 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.004G218200 [exp] 409 / 5e-143 AT1G60940 593 / 0.0 SNF1-RELATED KINASE 2B, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10, SNF1-related protein kinase 2.10 (.1.2) Potri.002G099700 [exp] 408 / 5e-143 AT1G78290 523 / 0.0 SNF1-RELATED PROTEIN KINASE 2C, SNF1-RELATED PROTEIN KINASE 2-8, Protein kinase superfamily protein (.2.3) Potri.007G096400 [exp] 402 / 9e-141 AT4G33950 514 / 0.0 SNF1-RELATED PROTEIN KINASE 2.6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, OPEN STOMATA 1, Protein kinase superfamily protein (.1.2) Potri.003G015400 [exp] 402 / 2e-140 AT1G10940 583 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.004G138300 [exp] 400 / 1e-139 AT1G10940 577 / 0.0 SNF1-related protein kinase 2.4, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-4, ARABIDOPSIS SERINE/THREONINE KINASE 1, Protein kinase superfamily protein (.1.2) Potri.T011000 [exp] 400 / 2e-139 AT5G63650 583 / 0.0 SNF1-RELATED PROTEIN KINASE 2H, SNF1-related protein kinase 2.5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10023855 pacid=23160721 polypeptide=Lus10023855 locus=Lus10023855.g ID=Lus10023855.BGIv1.0 annot-version=v1.0 ATGAATCGGGAAGCTATGACGGTCGGGCCAGGGATGGATTTGCCGATTATGCACGACAGCGACCGTTATGAGCTTGTTCGTGATATCGGGTCGGGGAATT TCGGGGTTGCTAGGCTTATGAGGGATAAGCAGACCAACGAGCTCGTTGCTGTCAAGTACATCGAGCGAGGTGACAAGATAGATGAAAATGTGCAGAGGGA AATCATAAACCACAGGTCATTGAGGCATCCCAACATTGTTAGATTCAAAGAGGTGATATTGACACCAACCCATCTGGCTATAGTCATGGAGTATGCGTCC GGGGGAGAGCTCTTCGAACGGATATGCAATGCTGGCCGATTCAGCGAGGACGAGGCACGCTTCTTCTTCCAGCAACTCATTTCAGGAGTTAGCTACTGTC ATGCTATGCAAGTATGTCACCGGGACCTCAAACTCGAGAACACGTTGCTAGATGGCAGCCCCGCACCTCGCTTGAAGATCTGCGATTTTGGATACTCTAA GTCATCAGTGCTTCACTCCCAGCCAAAATCTACAGTGGGGACCTACCCTTTCGAGGATCCTAACGAGCCTAAGAACTTTCGCAAGACGATTCAAAGAATA TTGAACGTGCAATATTCGATACCGGACTATGTTCACATATCGTTAGAGTGCCAGCACTTGATCTCGAGGATATTCGTCGCAGACACTGAAAAGGTCAGCA TCCTAACTTCTTACTTCCATTTTGCTGCAAGCAACTGTTTGTGTTTATGGGGTCTCTGCATTGATTGCAAACAGAGGATAAGCATTCCGGAGATAAGGAA CCATGATTGGTTCCTGAAGAATCTGCCAACTGATCTGATAACCGACAACTCGATGAGTAACAGCCAGTTCGAGGAGCCTGATCAGCCGTCGCAGAGTGTG GACGAGATAATGCAGATCATTGCAGAAGCTACGATTCCTGCAGCTGGGACACGGAGTCTGAACCAATGCTTAACGGGGAGTTTGGAGATTGACGACGACA TGGAGGAGGACCTCGAGACTGATCCTGATCTCGACCTCGATAGCAGCGGGGAGATAGTATACGCCATGTAA
AA sequence Show only first row Show all	>Lus10023855 pacid=23160721 polypeptide=Lus10023855 locus=Lus10023855.g ID=Lus10023855.BGIv1.0 annot-version=v1.0 MNREAMTVGPGMDLPIMHDSDRYELVRDIGSGNFGVARLMRDKQTNELVAVKYIERGDKIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYAS GGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTYPFEDPNEPKNFRKTIQRI LNVQYSIPDYVHISLECQHLISRIFVADTEKVSILTSYFHFAASNCLCLWGLCIDCKQRISIPEIRNHDWFLKNLPTDLITDNSMSNSQFEEPDQPSQSV DEIMQIIAEATIPAAGTRSLNQCLTGSLEIDDDMEEDLETDPDLDLDSSGEIVYAM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10023855 [exp]	0	1
AT2G27370		CASP3	Casparian strip membrane domai...		Lus10017008 [exp]	4.8	0.8961
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	6.0	0.8914
AT3G18180			Glycosyltransferase family 61 ...		Lus10016707 [exp]	7.5	0.8709
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10007796 [exp]	14.1	0.8831
AT2G30210		LAC3	laccase 3 (.1)		Lus10042249 [exp]	15.0	0.8760
AT5G47450		ATTIP2;3, DELTA...	DELTA-TONOPLAST INTRINSIC PROT...		Lus10004733 [exp]	15.2	0.8754
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10002593 [exp]	15.5	0.8492
AT2G30210		LAC3	laccase 3 (.1)		Lus10026401 [exp]	17.2	0.8677
AT2G21100			Disease resistance-responsive ...		Lus10034479 [exp]	21.4	0.8748
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10020997 [exp]	22.8	0.8177

Compare expression of checked genes

Lus10023855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.