Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15820 194 / 5e-57 OTP51 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020996 [exp] 357 / 6e-119 AT2G15820 737 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10012055 [exp] 235 / 2e-72 AT2G15820 795 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1) Lus10027928 [exp] 161 / 8e-46 AT5G20040 363 / 1e-119 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106800 [exp] 205 / 4e-61 AT2G15820 855 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 51, endonucleases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0324 [flax] [poplar] Homing_endonuc PF03161 [flax] [poplar] LAGLIDADG_2 LAGLIDADG DNA endonuclease family
Representative CDS sequence Show only first row Show all	>Lus10023856 pacid=23160784 polypeptide=Lus10023856 locus=Lus10023856.g ID=Lus10023856.BGIv1.0 annot-version=v1.0 ATGGAGAGCAATGAAGCAAAAATCGGAGTCGACACTGCATCGTGTAATGTGATTCTATCCGGTTGGCTCGAGTCGGGAGATCATGTCAAAGCAGAGAAGG TGTACGATTTAATGTGGAAGACGAGGTTCGCTTTCAAATCGACATCGATGGAGAAGCTTGAATATGTTCTGAGCCTGAGTAGGGAATACGCCAAGAGACC AGTTAGCCTCAAGTTAAGTTTCGAACAACGAGAAGCTTTAGTCGGACTGTTGCTGGGCGGTTTGGTGATCGAATCGGACGACCAGAGGAAGAATCATCAC ATGATCCGGTTCGAGCTCGATGAAGAGTTCCAGCATTCATTCGGTCTTGAGACAGCATCTGTACGGCGAGTATCGCGAGTGGTTGCATCCGTCCTATTTG CCACGATCTTGGATACTTATTTCGGTTTCTACGCTGACCAGTTCCGACCAAGAGGCCGGCCAGTGGTTCCGAAGCTGATCAATCGGTGGCTGTCTCCGCG AGCTATGGCGTACTGGTACATGTACGGTGGTCGTAGATCACAATCAGGGGATGTATTGCTGAAACTCGATGTCAATGAAGACGAAGAAAGTGTTGCCAGA GTTGTGAAAGTGCTTCAAAATAGATCACTCGAATACGAAGTAAAGAGAAAAGATCGAGTTTTCTGGATCGGTTTACTCGGAAGCAATGCGACGTGGTTTT GGTGGAACCGTATACACTAG
AA sequence Show only first row Show all	>Lus10023856 pacid=23160784 polypeptide=Lus10023856 locus=Lus10023856.g ID=Lus10023856.BGIv1.0 annot-version=v1.0 MESNEAKIGVDTASCNVILSGWLESGDHVKAEKVYDLMWKTRFAFKSTSMEKLEYVLSLSREYAKRPVSLKLSFEQREALVGLLLGGLVIESDDQRKNHH MIRFELDEEFQHSFGLETASVRRVSRVVASVLFATILDTYFGFYADQFRPRGRPVVPKLINRWLSPRAMAYWYMYGGRRSQSGDVLLKLDVNEDEESVAR VVKVLQNRSLEYEVKRKDRVFWIGLLGSNATWFWWNRIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10023856 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021540 [exp]	3.2	0.8981
					Lus10021406 [exp]	4.4	0.9086
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10036885 [exp]	7.9	0.8828
AT5G48540			receptor-like protein kinase-r...		Lus10025875 [exp]	8.5	0.8944
AT2G19130			S-locus lectin protein kinase ...		Lus10029802 [exp]	8.5	0.8877
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	9.2	0.8869
AT5G24130			unknown protein		Lus10039332 [exp]	9.8	0.8567
AT5G51890			Peroxidase superfamily protein...		Lus10031664 [exp]	9.8	0.8868
AT4G10250		ATHSP22.0	HSP20-like chaperones superfam...		Lus10026262 [exp]	12.7	0.8421
AT1G16130		WAKL2	wall associated kinase-like 2 ...		Lus10004504 [exp]	13.6	0.8799

Compare expression of checked genes

Lus10023856 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.