Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 120 / 2e-30 GARP Homeodomain-like superfamily protein (.1) AT1G68670 119 / 3e-30 GARP myb-like transcription factor family protein (.1) AT4G37180 118 / 5e-30 GARP Homeodomain-like superfamily protein (.1.2) AT1G25550 116 / 3e-29 GARP myb-like transcription factor family protein (.1) AT1G13300 114 / 2e-28 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT3G25790 108 / 2e-26 GARP myb-like transcription factor family protein (.1) AT1G49560 105 / 2e-25 GARP Homeodomain-like superfamily protein (.1) AT2G40970 64 / 2e-11 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G05090 64 / 2e-11 GARP Homeodomain-like superfamily protein (.1) AT3G10760 64 / 4e-11 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020995 [exp] 593 / 0 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10012056 [exp] 257 / 1e-82 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 137 / 3e-37 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 136 / 4e-37 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2) Lus10027927 [exp] 133 / 1e-35 AT2G03500 57 / 6e-09 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 123 / 1e-31 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10034280 [exp] 120 / 1e-30 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10043304 [exp] 121 / 4e-30 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10041485 [exp] 117 / 5e-29 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106600 [exp] 259 / 4e-83 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 256 / 1e-81 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.005G134600 [exp] 150 / 7e-42 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.007G039400 [exp] 148 / 5e-41 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.008G117500 [exp] 124 / 8e-32 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 122 / 5e-31 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.018G074200 [exp] 120 / 3e-30 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 110 / 1e-26 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.006G188000 [exp] 64 / 9e-11 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.016G032600 [exp] 63 / 9e-11 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023857 pacid=23160716 polypeptide=Lus10023857 locus=Lus10023857.g ID=Lus10023857.BGIv1.0 annot-version=v1.0 ATGAGTTCGGTTCCGGCGGAACTGAGCAGTAGCTTGTTCGATTTCAGGACGATGATGTCGTCGCCGTCGTCAAAGTTTGTCCCCATCGGCGATTTCCTGC GGACAACGATGATCGGAGACGCGAAAGTGGCGGAGAAAACTGCTCGCTCTTCTCTTCCTAGAGCGGAGAGCTTGTTGAGAGAGCTCCAGGAGGAGATGCG GAGGATCGATCACGCTAAGATCCAGCTCCCTCTCTGCATGCTCCTCTTGAACGACGCGATGATGCTTGTGAAGGAATCTGTGAAACGAGAGAAGCCACTG GTATTAGAAGAGTTTATACCGTTGAAGAAAGACGAAGAATGTAAAGACGACGACCGTTTGGTAAAAGCTGAGAAAGATTCGTGTAAGGATAAGAAGAGCT GGATGAGCTCTGTTCAGTTGTGGAGCTCTGATGATACAAGACAGAAGATAAACAAGAAGGGGGATCGATGTGGAAATGAGGATACATTCTCAGCTAGTAA AAACTGGACTCCTGTTAATTTACCAATCAAGAATGTGGCTAAGCTATCATCAACGAAGGAGGAGAGTGGTAGAGAGGAAGATTTGGCAGCTCGTAGTCTG TCTCTTCAAACTCCAGGGATGAAGAACTTGTCTGAGGAATCAGGCTCCACAGGCTCGCGAGTTACATCTAGCAGAGGAGGGATATCGTCTTCTGCACCTA ATTCCCAGTCCAGCTCTCATAAAGGACCGATCCTGCCTCTGCAGCCTTGTAGGAAGCAGAGGAGGTGTTGGTCACCTGAGCTTCACCGCCGCTTTCAGCT TGGAGGCTCCCAAGCTGCTACACCAAAGCAGATTAGAGAGATCATGCAAGTCGATGGCTTGACCAATGATGAAGTGAAGAGTCATTTGCAGAAATACCGG CTTCACACTCGAAGAATGGCGCCTGCTGGAACGGCTCCCGGAAATCAATCTCTAGTTGTTTTAGGGGGTTTGTGGATGTCACAAGAACAGTATGCAGAGT CCTCAAAGGCTGCTAGTTCCCAGTCTGGTTCTCCTCCAGGTCCCCTCGAGTTTGGTACAACACTTATGGATGAGGACGAGGATGAGGACGATGCGAAATC GGAGAACTATAGCTGGAAAAGCCTTACTCCAAGATCAGGAACAGGAAGAGCTGGTGTATAG
AA sequence Show only first row Show all	>Lus10023857 pacid=23160716 polypeptide=Lus10023857 locus=Lus10023857.g ID=Lus10023857.BGIv1.0 annot-version=v1.0 MSSVPAELSSSLFDFRTMMSSPSSKFVPIGDFLRTTMIGDAKVAEKTARSSLPRAESLLRELQEEMRRIDHAKIQLPLCMLLLNDAMMLVKESVKREKPL VLEEFIPLKKDEECKDDDRLVKAEKDSCKDKKSWMSSVQLWSSDDTRQKINKKGDRCGNEDTFSASKNWTPVNLPIKNVAKLSSTKEESGREEDLAARSL SLQTPGMKNLSEESGSTGSRVTSSRGGISSSAPNSQSSSHKGPILPLQPCRKQRRCWSPELHRRFQLGGSQAATPKQIREIMQVDGLTNDEVKSHLQKYR LHTRRMAPAGTAPGNQSLVVLGGLWMSQEQYAESSKAASSQSGSPPGPLEFGTTLMDEDEDEDDAKSENYSWKSLTPRSGTGRAGV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	0	1
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	1.0	0.9702
					Lus10028069 [exp]	2.8	0.9663
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028243 [exp]	3.7	0.9696
AT3G19540			Protein of unknown function (D...		Lus10028070 [exp]	3.7	0.9612
AT1G23460			Pectin lyase-like superfamily ...		Lus10029139 [exp]	5.5	0.9628
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	6.3	0.9609
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	6.5	0.9459
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10015461 [exp]	7.1	0.9431
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	7.7	0.9493
AT5G01930		MAN6, AtMAN6	endo-beta-mannase 6, Glycosyl ...		Lus10014184 [exp]	7.7	0.9677

Compare expression of checked genes

Lus10023857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.