Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49570 358 / 2e-123 Peroxidase superfamily protein (.1) AT5G06730 272 / 7e-90 Peroxidase superfamily protein (.1) AT5G06720 266 / 8e-88 ATPA2 peroxidase 2 (.1) AT4G36430 245 / 1e-79 Peroxidase superfamily protein (.1) AT5G05340 244 / 2e-79 Peroxidase superfamily protein (.1) AT4G08770 241 / 8e-78 Prx37 peroxidase 37, Peroxidase superfamily protein (.1) AT2G18150 241 / 8e-78 Peroxidase superfamily protein (.1) AT2G18140 240 / 1e-77 Peroxidase superfamily protein (.1) AT4G08780 240 / 2e-77 Peroxidase superfamily protein (.1) AT2G38390 239 / 5e-77 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020994 [exp] 550 / 0 AT1G49570 418 / 5e-147 Peroxidase superfamily protein (.1) Lus10009901 [exp] 340 / 4e-117 AT1G49570 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10004163 [exp] 252 / 2e-82 AT5G06720 446 / 1e-158 peroxidase 2 (.1) Lus10034207 [exp] 248 / 1e-80 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10032786 [exp] 243 / 8e-79 AT5G05340 403 / 1e-141 Peroxidase superfamily protein (.1) Lus10003573 [exp] 239 / 9e-78 AT5G05340 397 / 1e-139 Peroxidase superfamily protein (.1) Lus10026748 [exp] 241 / 1e-77 AT5G19890 402 / 6e-141 Peroxidase superfamily protein (.1) Lus10009937 [exp] 238 / 6e-77 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10025535 [exp] 240 / 4e-76 AT5G19890 406 / 9e-141 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G144600 [exp] 376 / 6e-131 AT1G49570 400 / 8e-140 Peroxidase superfamily protein (.1) Potri.009G106400 [exp] 370 / 1e-128 AT1G49570 429 / 2e-151 Peroxidase superfamily protein (.1) Potri.005G135300 [exp] 326 / 2e-111 AT1G49570 408 / 3e-143 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 266 / 5e-88 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.003G214800 [exp] 255 / 3e-83 AT5G06720 451 / 5e-160 peroxidase 2 (.1) Potri.013G154400 [exp] 254 / 3e-83 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 254 / 5e-83 AT5G06720 428 / 2e-151 peroxidase 2 (.1) Potri.013G083600 [exp] 251 / 3e-82 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.003G214500 [exp] 251 / 4e-82 AT5G19890 422 / 4e-149 Peroxidase superfamily protein (.1) Potri.001G011200 [exp] 246 / 6e-80 AT3G49120 381 / 2e-132 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10023858 pacid=23160830 polypeptide=Lus10023858 locus=Lus10023858.g ID=Lus10023858.BGIv1.0 annot-version=v1.0 ATGGGTTACACAAACTTCTTAGCCTTCACTACTTCAGTACTTGTTCTTATAACTTTGTCTACCCTTCATCAAGTCACTCCTTTCCCTTCTGCTGCATATT CTTCTTCTTCTCCTTCTTCTTCCGGACCTCTCGATTACAACTACTACGACCAGTCGTGCCCTCGTCTGTCCATGATCGTTCGGTATGGTGGTTGCGAGGG TTCGATCCTGCTGGACGACACGGTAGCTTTCAAGGGGGAGAAGAATGCACAAGCGAATCGTGGTTCCGCCAGAGGGTACGAGGTTATAGACAGCATCAAA TCTGATGTCGAAAAGGCTTGTCCAGGCACGGTCTCATGCACCGACATATTGGCTCTAGCAGCGAGAGAAGCTGTTGTTATGACAGGAGGGCCTTATTGGC CAGTTGCATTAGGGAGGAGAGACACGTTGACTGCCAGGGAAGCAGCAGTTGGTCAACAGTTGCCATCTCCTATAGAGTCATTGGATGACATCACCGCAAA GTTCAATTCCAAGGGCCTTGACCTTAAGGATGTTGTTGTCCTTTCAGGAGCACACACGTTAGGATTTGCACAGTGCTTTCTGATAAAGAGGAGGCTATTC AACTTCAAGGAATCGGGCAAGCCAGACCCGGCACTCGATTCCTCTACGCTGACGAACCTGCAGGGGAAATGTCCGAACAAGAACGAGTCGAACTCGATCC TCGTCCAGCTCGATTCGACAACGACCCGGTTCGACAACATGTACTACACCAACCTCGTAAACAATGCTGGCCTGCTCGACTCGGATCAAGCCCTGCTGAT GAACCCGACAACCGGGGACATGGTCCGGTCCTATAGCTCGAACCAGTATTTGTTCTACAGCGACTTCAAAGCATCGATGATGAAGATGGGCAGCGTTGGT GTGCTCACTGGGAAGGATGGTGAGATCAGAAGGAAATGTGGATCTGTGAATTAG
AA sequence Show only first row Show all	>Lus10023858 pacid=23160830 polypeptide=Lus10023858 locus=Lus10023858.g ID=Lus10023858.BGIv1.0 annot-version=v1.0 MGYTNFLAFTTSVLVLITLSTLHQVTPFPSAAYSSSSPSSSGPLDYNYYDQSCPRLSMIVRYGGCEGSILLDDTVAFKGEKNAQANRGSARGYEVIDSIK SDVEKACPGTVSCTDILALAAREAVVMTGGPYWPVALGRRDTLTAREAAVGQQLPSPIESLDDITAKFNSKGLDLKDVVVLSGAHTLGFAQCFLIKRRLF NFKESGKPDPALDSSTLTNLQGKCPNKNESNSILVQLDSTTTRFDNMYYTNLVNNAGLLDSDQALLMNPTTGDMVRSYSSNQYLFYSDFKASMMKMGSVG VLTGKDGEIRRKCGSVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	0	1
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10014711 [exp]	2.6	0.8388
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	3.2	0.8885
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	4.7	0.8550
					Lus10006216 [exp]	5.7	0.8450
					Lus10041324 [exp]	5.8	0.7626
AT5G65030			unknown protein		Lus10014340 [exp]	7.2	0.8208
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	7.7	0.8297
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	8.5	0.8404
AT5G15240			Transmembrane amino acid trans...		Lus10030683 [exp]	8.8	0.8245
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	9.2	0.7797

Compare expression of checked genes

Lus10023858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.