Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15790 572 / 0 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT3G63400 219 / 3e-68 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT2G21130 209 / 6e-67 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G38740 208 / 1e-66 ROC1 rotamase CYP 1 (.1) AT3G56070 201 / 4e-64 ROC2 rotamase cyclophilin 2 (.1.2) AT4G34870 200 / 2e-63 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G29960 199 / 1e-62 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT2G16600 197 / 3e-62 ROC3 rotamase CYP 3 (.1.2) AT3G55920 187 / 6e-58 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G58710 186 / 7e-58 ROC7 rotamase CYP 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020992 [exp] 709 / 0 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10012059 [exp] 616 / 0 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 526 / 0 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 212 / 4e-68 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2) Lus10012167 [exp] 210 / 2e-67 AT2G16600 313 / 4e-111 rotamase CYP 3 (.1.2) Lus10018746 [exp] 220 / 9e-66 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10024831 [exp] 219 / 1e-65 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10017258 [exp] 199 / 7e-63 AT2G16600 308 / 6e-109 rotamase CYP 3 (.1.2) Lus10022012 [exp] 195 / 2e-61 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G106200 [exp] 588 / 0 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 579 / 0 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.004G144300 [exp] 579 / 0 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 568 / 0 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.009G130100 [exp] 209 / 6e-67 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G168800 [exp] 206 / 7e-66 AT2G16600 278 / 4e-97 rotamase CYP 3 (.1.2) Potri.005G240200 [exp] 204 / 4e-65 AT2G16600 276 / 2e-96 rotamase CYP 3 (.1.2) Potri.002G021500 [exp] 202 / 4e-64 AT2G16600 278 / 2e-97 rotamase CYP 3 (.1.2) Potri.019G014396 [exp] 201 / 6e-64 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.005G215800 [exp] 207 / 5e-61 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF07719 [flax] [poplar] TPR_2 Tetratricopeptide repeat CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10023860 pacid=23160688 polypeptide=Lus10023860 locus=Lus10023860.g ID=Lus10023860.BGIv1.0 annot-version=v1.0 ATGGCGCGCCCAAGGTGTTTCTTCGACATAAGCATTGGCGGTGAACTTGAAGGCCGGGTTGTAATCGAACTCTACAACGACATTGTCCCTAAAACCGCCG ACAACTTCAGGGCTCTCTGCACCGGTGAGAAGGGCATCGGTCCCGCCACCGGCGTCCCTCTCCATTTCAAGGGAAGCCGATTCCACCGTGTGATCAAAGG GTTTATGATACAAGGCGGAGACATCTCAGCCGGAGATGGTACTGGTGGGGAATCCATCTACGGGGCGAAATTCGAAGACGAGAATTTCGAGATGAAACAC GAGAGGAAAGGAATATTGTCCATGGCGAATTCGGGTCCCAACACGAATGGTTCGCAGTTCTTCATTACCACAACTCGTACTCCTCACTTGGATGGGAAGC ATGTGGTGTTTGGCAGGGTTGTTAAAGGAATGGGAGTTGTGAGGTCAGTTGAGTTGGTCAACACTGCTGAGGGAGACACTCCGATTCTCGATGTCGTCAT TGCTGATTCTGGTGAGATTCCAGAGGGCGAGGATGATGGAGTAATAAACTTCTTCAAGGACGGGGATGAATATCCGGATTGGCCGGTTGACCTTAACGAC AGCTCTGAGGAGCTTACTTGGTGGATGGAGGCTGTGGATTCTATCAAGGCTTTTGGGAATGATCAGTTCAAGAAACAAGACTATAAGATGGCCATTAGGA AGTATCGGAAAGCTTTGAGGTATCTGGATATCTGTTGGGAGAAAGAAGGGATTGATGAAGAGAAGAGTTCAGCGCTGAGGAGGACAAAGTCTCAGATATT CACTAATAGCTCTGCTTGTAAGCTCAAAATGGGGGATGCTAAAGGAGCATTGATGGACACAGACTTTGCAATTCGTGAAGCAGATAACAATGTCAAAGCT TTATTTCGCCAGGGACAGGCATACATGGCGCTCAATGACATCGATTCTGCAGTTGAAAGCTTCAAGAAGGCATCGCTGTTGGAGCCAAATGATGCTGGAA TACGAAAGGAGTTGCTTGCTGCTAAGAAAAAGATAAATGCCAGACATGAGCAGGAGAAAAACCAGTACAAGAAGATGTTCCAATAG
AA sequence Show only first row Show all	>Lus10023860 pacid=23160688 polypeptide=Lus10023860 locus=Lus10023860.g ID=Lus10023860.BGIv1.0 annot-version=v1.0 MARPRCFFDISIGGELEGRVVIELYNDIVPKTADNFRALCTGEKGIGPATGVPLHFKGSRFHRVIKGFMIQGGDISAGDGTGGESIYGAKFEDENFEMKH ERKGILSMANSGPNTNGSQFFITTTRTPHLDGKHVVFGRVVKGMGVVRSVELVNTAEGDTPILDVVIADSGEIPEGEDDGVINFFKDGDEYPDWPVDLND SSEELTWWMEAVDSIKAFGNDQFKKQDYKMAIRKYRKALRYLDICWEKEGIDEEKSSALRRTKSQIFTNSSACKLKMGDAKGALMDTDFAIREADNNVKA LFRQGQAYMALNDIDSAVESFKKASLLEPNDAGIRKELLAAKKKINARHEQEKNQYKKMFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10023860 [exp]	0	1
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10040626 [exp]	3.0	0.9612
AT1G80530			Major facilitator superfamily ...		Lus10028803 [exp]	4.0	0.9512
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10013788 [exp]	4.6	0.9505
AT2G20470			AGC (cAMP-dependent, cGMP-depe...		Lus10033911 [exp]	4.6	0.9448
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	6.6	0.9331
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10042966 [exp]	7.2	0.9483
AT5G27120			NOP56-like pre RNA processing ...		Lus10004143 [exp]	11.2	0.9465
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10026477 [exp]	11.2	0.9358
AT3G23990		HSP60-3B, HSP60	HEAT SHOCK PROTEIN 60-3B, heat...		Lus10011898 [exp]	13.0	0.9434
AT3G47520		pNAD-MDH, MDH	plastidic NAD-dependent malate...		Lus10019096 [exp]	13.8	0.9421

Compare expression of checked genes

Lus10023860 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.