Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29320 430 / 7e-149 Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 42 / 0.0004 PRL1 pleiotropic regulatory locus 1 (.1) AT4G34460 42 / 0.0006 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020991 [exp] 601 / 0 AT1G29320 413 / 3e-143 Transducin/WD40 repeat-like superfamily protein (.1) Lus10019636 [exp] 47 / 2e-05 AT4G29860 477 / 4e-169 TANMEI, EMBRYO DEFECTIVE 2757, Transducin/WD40 repeat-like superfamily protein (.1) Lus10037500 [exp] 45 / 0.0001 AT4G15900 752 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10006511 [exp] 43 / 0.0003 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1) Lus10006916 [exp] 43 / 0.0004 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G092400 [exp] 534 / 0 AT1G29320 497 / 7e-175 Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G095100 [exp] 520 / 0 AT1G29320 458 / 1e-159 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G168600 [exp] 44 / 0.0002 AT1G78070 649 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 42 / 0.0008 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10023861 pacid=23160680 polypeptide=Lus10023861 locus=Lus10023861.g ID=Lus10023861.BGIv1.0 annot-version=v1.0 ATGCCGCGAACGACCACTGTGGAGTGTCCGGGGTGCCCTCCGCTTCGAGCCCTAACCTTCGACTCACTAGGTCTCATCAAAGTGGTTGAGTCTCGAGGTA GTAGCGTGATTCCTCAAGTGGTGGAAAGATGGGGGGACGCCGAGTCCTCCAAATACGTGCTTGCTGCATCCATTGACGATACTGAGAACGATCCTTTATT AGCGGTTTCAAGGAAAAATAAGACGATTGAGCTTTTGAATCCTCTAAATGGTGACATTCGTGTCTCGCTATCCCGTGATGCTGGTGCTCAACCTGAAGAT GACGATGATGATATTGCTGGCTTGCATTTATTCAAGAGTAACAGATCATCGGGATCATGCTCATTGCTTACATGTTCGACCAAAGGGAGTGCGAGTTTAA GATCAGTTGACACTACATCTGCAGAAAACAACAGCACTGGTACCTCTAATTCGTGGAAAGTTTCCGCTGCTGGTACAATCTTGTGTTCTAAAGTTCATGC AAGTGAGAAGCATGCACTGTTTGGAGGGAAGGGTGTTGAAGTCAATTTGTGGGATCTAGAGAGCACTACTAAGATTTGGGGTGCAAAACCTCCTCCTAAA AACAGCCTTGATATTTTCACCCCAACATGGTTTACATCTGCGACATTCCTCGATGGGGACGACCACCGGAAGTTTGTTGCTGGCACCAACAGCCATCAGG TTCGTGTGTATGACGTTTCTGCTCAACGGAGACCAGTGATATCTTTCGATTTCCGGGAAACTCCCATTAAATCAGTAGCAGAAGATCATGATGGTTACAC TATTTATGTGGGAAATGGGTCTGGTGACCTTGCCTCGTTTGACACACGCACAGGAAAACTATTAGGATGCTTTTTGGGCAAGTGTTCCGGAAGCATAAGA TCCATGGCCAGACATCCAGATCACCCGGTGATAGCATCATGCGGTCTCGACAGCTACTTACGTTTGTGGGATGTGAAGACAAGACAGCTTCTTTCAGCTA CTTTCCTGAAGCAGCATCTCACTTGTGTCGTCTTCGATTCCAAATTCCTCGACAAACAGGTTATTACTGATGATACTCCCCCCGATGATGAGGAGGAAGC TCTGGATAAGCCTCTGAAGAGGAAGAAGTCTTCCAAAGGAAGCACCAAGACCGAAAAGAAGAAATCTAGAGATAATGGTTCAACCAAACAGTCCAAGAAA AAGAGCCGTCGGGTGGAGAATGTAGACTCTTAA
AA sequence Show only first row Show all	>Lus10023861 pacid=23160680 polypeptide=Lus10023861 locus=Lus10023861.g ID=Lus10023861.BGIv1.0 annot-version=v1.0 MPRTTTVECPGCPPLRALTFDSLGLIKVVESRGSSVIPQVVERWGDAESSKYVLAASIDDTENDPLLAVSRKNKTIELLNPLNGDIRVSLSRDAGAQPED DDDDIAGLHLFKSNRSSGSCSLLTCSTKGSASLRSVDTTSAENNSTGTSNSWKVSAAGTILCSKVHASEKHALFGGKGVEVNLWDLESTTKIWGAKPPPK NSLDIFTPTWFTSATFLDGDDHRKFVAGTNSHQVRVYDVSAQRRPVISFDFRETPIKSVAEDHDGYTIYVGNGSGDLASFDTRTGKLLGCFLGKCSGSIR SMARHPDHPVIASCGLDSYLRLWDVKTRQLLSATFLKQHLTCVVFDSKFLDKQVITDDTPPDDEEEALDKPLKRKKSSKGSTKTEKKKSRDNGSTKQSKK KSRRVENVDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G29320			Transducin/WD40 repeat-like su...		Lus10023861 [exp]	0	1
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	5.4	0.8668
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	7.3	0.8649
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	7.4	0.8554
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	7.7	0.8389
AT2G39990		AteIF3f, EIF2	Arabidopsis thaliana eukaryoti...		Lus10028272 [exp]	8.1	0.8434
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	8.5	0.8525
AT5G61330			rRNA processing protein-relate...		Lus10012469 [exp]	10.5	0.8312
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	12.6	0.8491
AT5G16150		PGLCT, GLT1	GLUCOSE TRANSPORTER 1, plastid...		Lus10009158 [exp]	13.0	0.8244
AT1G42440			unknown protein		Lus10013232 [exp]	13.6	0.8591

Compare expression of checked genes

Lus10023861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.