Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55810 336 / 6e-118 ATNMNAT nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014366 [exp] 120 / 1e-31 AT4G33940 189 / 2e-57 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G021900 [exp] 347 / 5e-122 AT5G55810 338 / 1e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2) Potri.005G032300 [exp] 341 / 1e-119 AT5G55810 337 / 4e-118 nicotinate/nicotinamide mononucleotide adenyltransferase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10023862 pacid=23160751 polypeptide=Lus10023862 locus=Lus10023862.g ID=Lus10023862.BGIv1.0 annot-version=v1.0 ATGGATTATCCACTGCCGATGGACAAAGTCTCTGCTCCCACCAAGGACGAAGGCAAGGTGTATGTAGTTTTAGTGGCCACTGGTAGCTTCAATCCGCCTA CGTTCATGCACTTGCGGATGTTTGAGCTGGCAAGAGATGCATTACAATCGGAGGGATATCGGGTGATTGCTGGGTATATGTCGCCAGTTACCGATGCCTA TAAGAAGCCGGGTCTCATTTCTGCTGCGCATCGTTTGCGCATGTGTAATTTAGCATGTGAGAGCTCTGATTTCGTCATGGTTGATCCTTGGGAGGCAAAT CAAAGCACCTTCCAGCGCTCCTTGACGGTATTGCAAAGAATCGAAAGTGTTTTCATCAACCAAGTTCGTATATCCAAAGAATCTCTCAAGGTCATGCTTG TTTGTGGTGCTGATCTGCTGCAGTCGTTCGGCACTCCTGGATTCTGGATTCCTGATCAGGTAAGGACCATATGCAGAGACTTTGGTATAGCTTGCATTAG AAGGGAAGGCCACGATGTCCAGCAGATCATAGCTGCTGATGAGATCTTGAATCAAAACAAGGAGAACATCAAATCTGTTGATGAACCTATACTAAACATG ATAAGTTCCTCAAAACTGAGGGATTGCAGATTGAGAGGATTATCTATTAAGTATTTAACAGCAGATTCTGTGATCAGCTACATTAAAGAGCACAATTTGT ATTTGGAAAACAGTTAG
AA sequence Show only first row Show all	>Lus10023862 pacid=23160751 polypeptide=Lus10023862 locus=Lus10023862.g ID=Lus10023862.BGIv1.0 annot-version=v1.0 MDYPLPMDKVSAPTKDEGKVYVVLVATGSFNPPTFMHLRMFELARDALQSEGYRVIAGYMSPVTDAYKKPGLISAAHRLRMCNLACESSDFVMVDPWEAN QSTFQRSLTVLQRIESVFINQVRISKESLKVMLVCGADLLQSFGTPGFWIPDQVRTICRDFGIACIRREGHDVQQIIAADEILNQNKENIKSVDEPILNM ISSSKLRDCRLRGLSIKYLTADSVISYIKEHNLYLENS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55810		ATNMNAT	nicotinate/nicotinamide mononu...		Lus10023862 [exp]	0	1
AT5G63080			2-oxoglutarate (2OG) and Fe(II...		Lus10001249 [exp]	1.0	0.9458
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039425 [exp]	1.7	0.9260
AT4G10920		KELP	transcriptional coactivator p1...		Lus10023061 [exp]	2.0	0.9338
AT1G15860			Domain of unknown function (DU...		Lus10026216 [exp]	2.0	0.9220
AT4G20330			Transcription initiation facto...		Lus10029563 [exp]	3.0	0.9136
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10037648 [exp]	5.1	0.9054
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	5.7	0.9160
AT5G27830			unknown protein		Lus10020660 [exp]	6.2	0.9015
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Lus10033914 [exp]	7.7	0.9195
AT5G53530		VPS26A	vacuolar protein sorting 26A (...		Lus10037421 [exp]	10.4	0.9059

Compare expression of checked genes

Lus10023862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.