Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12100 698 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G55840 322 / 1e-95 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 304 / 4e-91 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G39710 299 / 6e-90 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 301 / 4e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 293 / 4e-89 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G65560 294 / 9e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 282 / 2e-85 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 282 / 9e-85 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 281 / 2e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008650 [exp] 1054 / 0 AT5G12100 702 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10035577 [exp] 522 / 1e-180 AT5G12100 363 / 8e-119 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014365 [exp] 511 / 2e-174 AT5G12100 268 / 4e-81 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036020 [exp] 338 / 1e-103 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 316 / 1e-94 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 309 / 6e-92 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 307 / 3e-91 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 298 / 4e-89 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 295 / 4e-89 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249800 [exp] 898 / 0 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G236800 [exp] 336 / 3e-102 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 338 / 8e-102 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 323 / 1e-99 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 312 / 2e-95 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 313 / 3e-94 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G105600 [exp] 310 / 1e-93 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G368700 [exp] 310 / 4e-91 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 295 / 2e-88 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G147700 [exp] 286 / 3e-86 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10023863 pacid=23160813 polypeptide=Lus10023863 locus=Lus10023863.g ID=Lus10023863.BGIv1.0 annot-version=v1.0 ATGGCGAGGCGGGTGCTGCCTCCGCGTCTTCTTCTCAGTTCCATCTTCTCTACTTCCGTCAAGGTGTCACCTCTGACCTTCTCGTCGTGTTTCTCCACAC TCTTCCCAGAACACAAAGCTCCACCGGATATCAGTAATGACCAGGAACGCCATGAGCAAGTTACAAAGCTTATGGCTCTCCTTCAGGAAGGCAGCAGCGA GAAAGCTCACTACTTTACGAAATCAATGCTTCTTTCCAAGTCCCCATTCTCGTCGCCTTCCGATCTTCTCTCCTTCTCCACCACTTGTTCTCCTTCCTTG AGCCCCGCACTCTCCAGCATGTTACTCGTCATAAGCTGCGAGTCCAAAATGCAAGGTATGGAGTCAAGGAACATGGCTGGGAATCTCTCTGCGTTTTTTA CGGCTAGAGAGTGTCTCGGAACGTTAGTGGAGTCCAAGCAGTTCAAAAAAGTGCTTGAATTGTTTGTGGAGACTGTGGAGTTAGGTTTCAGACCTGATAC GTTCATGTGTGGGAAAGCTGTGCAGGCAGCGGTGAAGTTGGGGGATTTGAAGAGGGCAACTGAGATTCTTGAATCGATGAAAAGCTGTGGAGTGCGTCCT AATGTGTTTGTTTACAATGTTATGATCGGCGGGCTGTGCAAGGAGAAGAGAATCAGGGACGCAGAGAAGGTGTTCGATGAAATGCGTGAGAGAGGGCTAG CTGCTAATAAAGTAACCTACAATACGTTGATTGATGGGTATTGTAAGGCGGGAGAGGTCGAGAAAGCGTTTGGTTTGAGAGATAGGATGCGTAACGAGAA CGTTGAACCTAGCGTTGTTACATTCAACACGCTTCTTAGTGCTCTGTGTAAGGCCAAGCGAATGGGAGATGCCAAAATGTTGCTGCAGGAGATGGAAGCC AATGGCTTTGCCCCCGATGGGTTTACTTACTCCATATATTTTGATGGTCTGTCAAAGAGTGGCGACGGAGCAAGTGCATTGGAGTTGTACGAGACGGCCG TTTCGAAAGGAATGAGGATGAATACTTATACAGGTAGTATCTTGTTGAATGGGCTGTGCAAAGAAGGTAAAGTGGGGAAGGCTGACGAGGTTTTGAAGAA GTTTATGGAGAATGGATTTGCTCCTGATGAAGTGGTGTATAACATTCTTGTTAACGGGTACTGTCTGGTGGATGACATGGATAGAGCGATTCTGACCTTG GAGAGCATGGAAAGAAATGGTTTGAAGCCAAATAGCATCACTTACAACTGTTTGATCCATAAATTTTGTGAAATGCAGAAGATGGAAACTGCGGAGGAAT GGATAGAGAAGATGGTAATGAAGGGAGTTGCACCAACTGCGGAGACTTACAATACCCTTATCGATGGGTACGGACAAGCTTGCATCTTTGACAGGTGCTT TCAACTTCTTGAAGAAATGGAAGACAAGGGTGTAAAGCCGAATGTGGTAACGTATGGCTCGTTGATAAATCGTTTAAGCAAAAACGGGAAGATTATTGAA GCCGAGATAGTCCTTAGAGATATGTTTGGGAGAGGCGTCTTGCCCAACACACAGATATATAACATGCTCATTGATGGCAGCTGTTTAGCAGGGAAGTTGC AAGATGCTTTGAGATTCTTTGATGAGATGTTGAGAAGTGATATTGTCCCTTCTCTTGTGACCTACAATGCATTGATGAACGGTCTCTGCAAACAAGGGAA GTTAACCGAAGCAGAAGACTTGCTTCAAGAGATCGCAAACCACAGACTTAGTCCGGATGTTATAACATACAACTGCTTGATCTCTGGGTATGCAAGTGCT GGCAAGAGGCAGAAATGTCTGGAGGTGTATGAAACCATGAAGAAGACCGGCATCAAACCTAATGTAAGTACATTCCATCCCTTGATCGGTGAATGTGGCA AGGCAGGCCTGGAGATTATGGAGAAACTGTTTAACGAGATGCTGCAACAGAACTTGGTTCCGGACAGAGTCATTTACAATGCCATGATCTTTTCCTTTGT GGAGTCTGGACTTAAGGAAAGAGCCGTTGGTTTACGCGACGAGATGCTAGCTAACGACATTCTCCCGGATAATATGACCTATAACAGTCTGATTCTTGGA CGGGTTAGAGAAGGGAAGTTCTCAGAAGTGAATGATCTTGTTGCTGATATGAAGGCCAGAGGATTAGCTCCGGAATCAGACACTTACAGTATACTGATTA AGGGATACTGTGACCAGAAAGATTTTGGTGGAGCGTACGCTTGGTACAGGGAAATGCTCGAGAATGGTATGTCACCAAACATTGGGAGTTGTAATGAGCT AATCTCTGGTCTTAGAGAGGAAGGGAAAGAGGTAGAAGCCCAGATGATTTTGGCAGAGTTGAACAGTAAAGGCGTGGACGATTCAAGCCCTGCCTAG
AA sequence Show only first row Show all	>Lus10023863 pacid=23160813 polypeptide=Lus10023863 locus=Lus10023863.g ID=Lus10023863.BGIv1.0 annot-version=v1.0 MARRVLPPRLLLSSIFSTSVKVSPLTFSSCFSTLFPEHKAPPDISNDQERHEQVTKLMALLQEGSSEKAHYFTKSMLLSKSPFSSPSDLLSFSTTCSPSL SPALSSMLLVISCESKMQGMESRNMAGNLSAFFTARECLGTLVESKQFKKVLELFVETVELGFRPDTFMCGKAVQAAVKLGDLKRATEILESMKSCGVRP NVFVYNVMIGGLCKEKRIRDAEKVFDEMRERGLAANKVTYNTLIDGYCKAGEVEKAFGLRDRMRNENVEPSVVTFNTLLSALCKAKRMGDAKMLLQEMEA NGFAPDGFTYSIYFDGLSKSGDGASALELYETAVSKGMRMNTYTGSILLNGLCKEGKVGKADEVLKKFMENGFAPDEVVYNILVNGYCLVDDMDRAILTL ESMERNGLKPNSITYNCLIHKFCEMQKMETAEEWIEKMVMKGVAPTAETYNTLIDGYGQACIFDRCFQLLEEMEDKGVKPNVVTYGSLINRLSKNGKIIE AEIVLRDMFGRGVLPNTQIYNMLIDGSCLAGKLQDALRFFDEMLRSDIVPSLVTYNALMNGLCKQGKLTEAEDLLQEIANHRLSPDVITYNCLISGYASA GKRQKCLEVYETMKKTGIKPNVSTFHPLIGECGKAGLEIMEKLFNEMLQQNLVPDRVIYNAMIFSFVESGLKERAVGLRDEMLANDILPDNMTYNSLILG RVREGKFSEVNDLVADMKARGLAPESDTYSILIKGYCDQKDFGGAYAWYREMLENGMSPNIGSCNELISGLREEGKEVEAQMILAELNSKGVDDSSPA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12100			pentatricopeptide (PPR) repeat...		Lus10023863 [exp]	0	1
AT2G41080			Tetratricopeptide repeat (TPR)...		Lus10022629 [exp]	1.0	0.9069
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	1.4	0.8974
AT3G03580			Tetratricopeptide repeat (TPR)...		Lus10007806 [exp]	2.2	0.8624
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021068 [exp]	3.5	0.8671
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043276 [exp]	4.0	0.8380
AT3G18970		MEF20	mitochondrial editing factor ...		Lus10015912 [exp]	4.8	0.8104
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10016511 [exp]	4.9	0.8448
AT3G13160			Tetratricopeptide repeat (TPR)...		Lus10018393 [exp]	5.2	0.8707
AT5G08490		SLG1	SLOW GROWTH 1, Tetratricopepti...		Lus10016943 [exp]	6.5	0.8415
AT5G47460			Pentatricopeptide repeat (PPR)...		Lus10028953 [exp]	8.0	0.8210

Compare expression of checked genes

Lus10023863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.