Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36490 509 / 9e-154 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 365 / 4e-104 DML2 demeter-like 2 (.1) AT5G04560 360 / 6e-101 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT4G34060 266 / 2e-73 DML3 demeter-like protein 3 (.1.2) AT3G47830 75 / 4e-14 DNA glycosylase superfamily protein (.1) AT4G04957 69 / 6e-14 Domain of unknown function (DUF1985) (.1) AT1G05900 52 / 3e-06 ATNTH2 endonuclease III 2 (.1.2) AT2G31450 46 / 0.0002 ATNTH1 DNA glycosylase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014367 [exp] 3097 / 0 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10027713 [exp] 1163 / 0 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 1147 / 0 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10034120 [exp] 78 / 1e-14 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 61 / 1e-08 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10025575 [exp] 45 / 0.0004 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10043074 [exp] 45 / 0.0005 AT4G12740 468 / 7e-161 HhH-GPD base excision DNA repair family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116000 [exp] 433 / 7e-125 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.010G234400 [exp] 384 / 3e-108 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 378 / 2e-106 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 293 / 4e-80 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.015G071300 [exp] 79 / 3e-15 AT3G47830 343 / 9e-119 DNA glycosylase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [flax] [poplar] HHH PF00730 [flax] [poplar] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Lus10023864 pacid=23160702 polypeptide=Lus10023864 locus=Lus10023864.g ID=Lus10023864.BGIv1.0 annot-version=v1.0 ATGGAAAGGGGAGGAAGAAACGATGCTGTGGCGTCGGCGCCCCAGCCGGCGGTGATCTACACGGATAGGCTGGGGAATCCATTGTTGCAGCAGCAGCATC AGCAACCTACCAACTGGCCTCCTCCTGCACCAGCTAATTTTTCGTCAGGGTTTATGCATGCTGCTGCTCCTACTGCTGATATGGAGAGATGGAAGGATGT TCCTTTTCAGTGTCTCCTGGCTCTAACAGAAACAGCATCATCAATACCCACTGTTCCTCCATGGGGAGGAATAGACTTAAACTTTGATTATGGATACCAA GATCCTGTTCCTCAGCATTATGGCTACAACTTACCTCAAGGAAGCATGGCCGAGTCGTCCTTGAGTCTTGGATTTGCTCCAGTTACGCCGCAGAAGGAAA TGGTGCAGAGTCATTATATTAATGGAAGCCTTGAGCTTGCTCCTATACTCACAACTGAGGAGGAGGTAAGAGTTGAGGGCGTACAAGATTTGCTTTGTCA AGAAACACTTATTAACAGAGCTGATGCTGTCATTACTCCGGATGAAAATGATGGAAGGAACTTGGAATCTACATTAGCAGCTAGCTTGACATGGGCTAAT CACAACCGCGAGAAGGTGGATTTCAGTTTAATCGACTTGAACAAGCTTCCGCCACTGCCAACACCGAAGCGCAAGGCTAAGAGGAAGAAGCACGTACCTA AGGTTCTCGTGCTCGTGGATGGAAAACCAAAGAAGAGGAAACAGCCGGAGACAACGCCAAAGCCGTCCAAGAAGAACAGCGAGAAGCAAGGTGCACCTAC TGTAGTGAACGGAACCACCGCTCCATTTGAGATGCATGATGGAGTTGCTTTTAAAGAAGGAACTCCGAGGAATATAAAGTACTCACGGAGAGGTGTTCAT AAAACCGTCACAGGCATTGATTCAGCAGGAATTCAGGAGGCCAATAATACACCGCCACCTGAAGAAGCAACTGGAGAGTCTGCAGATCCACAACAAGGTC CTCCACCTGCAAAAAGATCATGTAGAAGAGAGTTAAGCTTTGACTTAGAAGAACCAGCAGCTCAAAACTATACACCCGGCTGTCTATCTCCCAAACGCGT GACGCGCAGCCAATCAGCATCCATCGAAGTGAAGATGCAGAAAACATCGGCAGGAGCTCCGTACGACTTCAACAGTTCTGTTAATGAAATGCTTAGAAGT TATTCTTCCATGACAGGAGAAGCAAGTGGATCAGTGGACAAGCATTCCAGTCTTGCTGAATCAGCCACTGGATTCTGTACTGGTTTGTCTTCATACCCGA CATTACCTTGGGCGCTAATTCCGGTGTGCCGGAAGAAGAGGACCAAAAAACGCCAAAACTCATCGGTCTCAGGTGCACCAGTTCATTCAGCTTCCAAAAA GGTCATAACAAGTATTGCCACACCAGTTTTTCCGGCTTCTGAAAAGGCAATCTCCAATACTGCAACAGCAAGCATCAACTACTTGACTTATGCTCATTGT GCTGGAAATGGACTTCCGGTAAGTCCCAACGGATCTAGCCTTCGGTACAAACTGCACAACTTCAGTCCCTTATATGATACTGAAATGTTGGCAACTAAAA GAAGGTCTAGAGCTCCTGTTCGGGTTCGAGATTTGGCTTCTCTTGTCAGTATACCTCCTCTGACTGCTCAAACACCAACGACTTGTGGCAACCGACATAT TCAGAGCTTAAATAGGCTTGATCAAGGTTTGGCTTCTCATGCCAGTATCCCTCCTCTTCAGACTGGAAAAATACCAACGACTTTTGGTAACCGACATATT CAGAACTTAAATAGGCTTGATCAAGATTTGGCTTCTCTTGCTGGTATCCCTCTTCAGACTACTGGCCAAATACCAACGACTTGTGGTAACCGACATATTC AGAACTTAAATAGCTTTGATATGCGTATGGAAGCACTAGTTGCCGATGGTAAAGCAACCTTGGATGCACTAGTCACAGGTGGTGGTAAAGAAACCTTGAA GACTGCGAAAATAAGCAGAAGGGATTCTCAAACTATATATGCATCCTCAAAGGTGAATGATAGAAGACCACAAGGCATTATGGTTCCGTTGGTTCAGAAC AAATTGCTACATCCGGCTTCAGGTTCCGTGGACATTCTATTTAACCAATTCTTACATGTGGATGTCTTGGCTGAGCAGTTAAACCACCTTAACATTAACA GGGGAAACCCCATCAATGCTTGTACACAGAGGAATCAACTTGTTCCTTACAATGCTGGGAAACAAAAGCAGAATGCAATGGTTATATACACAGGCGATGA TAGGATTATTCCATTTCAACCACCAAAAAAGAAGCGACCAAGGGCAAAGGTCGAGTTAAATGAGGAGACACTTAGAGTGTTTAATCTACTATTAAAAGAC ATAGACAGCGAAGGTATTGATGGAACAGATGAAGCAAAGAAAAAGTACTGGGAAGATGAAAGGAAGATCTTCCGAGGACGAACAGACTCCTTCATAGCAC GAATGCATCTAGTACAAGGAGATAGGCGTTTCACTAGGTGGAAGGGATCAGTTGTGGACTCAGTTGTTGGGGTATTTCTAACTCAGAACGTCTCAGATCA TCTTTCCAGTTCTGCATTTATGTCAATGGCTGCTCGTTTCCCAATTAAGAGAGAGGAGACGCCATGCCGGGATGAAGGAATGCACTGTGTAGTGGCTAAT CCAATAGTTTCTATGCCAGATGAGGAGGCCGTGAACTTGGATGAGATGTCAAATCAATCAGTTTCTGACAGAAGTTCCATAACTCTTCATGATCCTCAGA TTGAAGAAGCAGAAGTTGTGCATACCATAGATTCCACAAGAAGCATGAGTAGTGATACTAACTTCATACCTGGTGAAGAGAACTACAATGAATTAGTGAT CTCTTCTCAGAATTCAACGGTTTCATCTCAAAACTCAAATTCACCAGTTAGTCAAACTGTTGACAGAAAAGATTCATCCTCAGAGACCAACTCTCAAGAA TTGGATCCTACTGACGCAGCCCAAATCAACAGCTTTAATGTAGTTAATTCGTTTCTTGAGCTCCTACATATGGCTCAGTCTGGATCAAGCATGCCGCACG AAGTTCCCAAATTTTTGCATCAAAGTCTGAACGAGACTGCCAAAACATCAACCCTGGGTATCCCGACTCGAAAAGAATCTGTTGAACCGACGGAACTTGC AGACGAACCACTGAAACAGTTTGTTGGTAACGTAATGCAGCAACCAGAACAAGTTGCAAACCGTTCAGAAGTGATGTTTGATATTGTGGAAAGTAGCAGG GAGAAGGAAAATGTTTCAGAGAAAACGACGGCTTCAAATATGATTAACCATCCCAATTCTAGAGTTAAGGGTGTCAAAGACATCGATGCTGCTCGGAGAA AAGCGAAAAGTAGAAGGGTTGGCGATGAAATCAAAGATGCTGACTGGGAGGCACTGAGAAGAAGTGCCAAACAAAGTGGGGAAAAAAATGAGAGGGCAGA GAACGCAAAGGACTCTGTGGATTGGGAAGCTGTAAGATGTGCAGATGTGAATGAGATTGCTGAGACAATAAAAGCACGTGGGATGAACAACATGCTTGCA GCACGCATTAAGGAGTTTCTTGATAAAGTGCTAACCTATCACGGAAGTGTTAATCTGGAATGGTTAAGAGATGTTCCTCCCGATAGAGCAAAAGAGTACC TGCTAAGCTTTAACGGGCTGGGGTTGAAAAGTGTGGAGTGCGTAAGGCTTTTGACGCTTCATCACCTAGCATTTCCGGTTGATACCAATGTTGGACGCAT AGCTGTCCGACTTGGATGGGTCCCACTGCAACCATTACCTGAATCACTACAATTGCATCTACTAGAAATGTACCCTGTACTGGACACAATTCAAAAGTAT TTGTGGCCTCGATTGTGCAAACTTGATCAGAAAACACTGTATGAACTGCATTATCAGCTTATCACGTTTGGAAAGGTTTTTTGTACAAAAAGCAAGCCGA ACTGTAATGCTTGTCCAATGAGAGGAGAATGTAGACATTTTGCCAGCGCATTTGCAAGTGCAAGACTTAGCCTCCCGGGACCAGAGGAAAAAAGAATCGT CACTGCAACTCAAGAAAGGCCACCCTTCCCAAGGCCGGTGATGCCAAATGCTCAAAGATGTCCACCTTTATTAACCATATGTGAACAGCCAAATCAGCCA ACGATATCTCTACTACCGTCAAGTTCATCAGCACTACCGGCAACCTCATCAGCACCTGAACAAGAAAAACAACAGTTGACGTCAAGTTCATCAGTGCCTG AACAAGGAAAACAACAGTCGATGTCAAATCCATCAGTGCCTGAACATGGAAAACAACAGCCTACGTCAAGTTCGTCCATGCATGAACAAGAAAAATGGCA ACCAACGTCAAGTTCATCTGTACCCGGCCAAGAAAATCATCATTCGGTGGTGTCGGAACAGCCAGTAGCCAATTTAAGAGTCAGCCGTGAACCGATTATC GAGGAACCATTATCACCTGAGCCATTCATATTACCTGACATTGAAGATTTCTTTTACGAGGATCCTGACGAAATCCCAGTTATTAAGTTGAATGTTGAAG AGCTTGCTCAGAATATAGAGACATATCTCAAGCAGCAGAACTTGGATATTCGTGAAAGTGACATGTCATTGGACTTAGTTGCGATGGCTACTGAAGCTAC GTACATGCCTCCCCCCAAGCTTAAGAACATTAGCCGGCTACGAACGGAGCACCAAGTATACGAACTTCCAGACCGTCATCGTCTCCTAGAAAAGTTTGAC AAGCGAGAATATGACGACCCATCTCCATATCTCCTTGCAATATGGACGCCAGGCGAAACAGCAGACTCTGTCTCACCTCCAGAAAGAAGATGCACCTCAC AGTCAGAGGGTAGATTATGTGAGGAGGGAACATGTCCCTTGTGCACCAGCTACTTGGAAGCAAAGCGTCAAATAGTCAGAGGGACTATTCTGATACCCTG TCGAACAGCAATGCGAGGAAGTTTTCCCCTCAATGGCACGTACTTTCAAGTCAATGAGGTATTTGCTGACCATGAGAGCAGTCTCAAGCCAATTGAGGTA CCAAGATCATGGCTCTGGAATCTACCAAGAAGAACGGTCTACTTTGGAACATCTGTGCCGACAATATTTAGGGGTTTAACGACAGAGGAAATCCAACAAT GTTTCTGGAGAGGTAAGCAAGCAGCTATATTGCTTTTATTTATTTCTGTTCTTAATGATGCATGA
AA sequence Show only first row Show all	>Lus10023864 pacid=23160702 polypeptide=Lus10023864 locus=Lus10023864.g ID=Lus10023864.BGIv1.0 annot-version=v1.0 MERGGRNDAVASAPQPAVIYTDRLGNPLLQQQHQQPTNWPPPAPANFSSGFMHAAAPTADMERWKDVPFQCLLALTETASSIPTVPPWGGIDLNFDYGYQ DPVPQHYGYNLPQGSMAESSLSLGFAPVTPQKEMVQSHYINGSLELAPILTTEEEVRVEGVQDLLCQETLINRADAVITPDENDGRNLESTLAASLTWAN HNREKVDFSLIDLNKLPPLPTPKRKAKRKKHVPKVLVLVDGKPKKRKQPETTPKPSKKNSEKQGAPTVVNGTTAPFEMHDGVAFKEGTPRNIKYSRRGVH KTVTGIDSAGIQEANNTPPPEEATGESADPQQGPPPAKRSCRRELSFDLEEPAAQNYTPGCLSPKRVTRSQSASIEVKMQKTSAGAPYDFNSSVNEMLRS YSSMTGEASGSVDKHSSLAESATGFCTGLSSYPTLPWALIPVCRKKRTKKRQNSSVSGAPVHSASKKVITSIATPVFPASEKAISNTATASINYLTYAHC AGNGLPVSPNGSSLRYKLHNFSPLYDTEMLATKRRSRAPVRVRDLASLVSIPPLTAQTPTTCGNRHIQSLNRLDQGLASHASIPPLQTGKIPTTFGNRHI QNLNRLDQDLASLAGIPLQTTGQIPTTCGNRHIQNLNSFDMRMEALVADGKATLDALVTGGGKETLKTAKISRRDSQTIYASSKVNDRRPQGIMVPLVQN KLLHPASGSVDILFNQFLHVDVLAEQLNHLNINRGNPINACTQRNQLVPYNAGKQKQNAMVIYTGDDRIIPFQPPKKKRPRAKVELNEETLRVFNLLLKD IDSEGIDGTDEAKKKYWEDERKIFRGRTDSFIARMHLVQGDRRFTRWKGSVVDSVVGVFLTQNVSDHLSSSAFMSMAARFPIKREETPCRDEGMHCVVAN PIVSMPDEEAVNLDEMSNQSVSDRSSITLHDPQIEEAEVVHTIDSTRSMSSDTNFIPGEENYNELVISSQNSTVSSQNSNSPVSQTVDRKDSSSETNSQE LDPTDAAQINSFNVVNSFLELLHMAQSGSSMPHEVPKFLHQSLNETAKTSTLGIPTRKESVEPTELADEPLKQFVGNVMQQPEQVANRSEVMFDIVESSR EKENVSEKTTASNMINHPNSRVKGVKDIDAARRKAKSRRVGDEIKDADWEALRRSAKQSGEKNERAENAKDSVDWEAVRCADVNEIAETIKARGMNNMLA ARIKEFLDKVLTYHGSVNLEWLRDVPPDRAKEYLLSFNGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPVLDTIQKY LWPRLCKLDQKTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLSLPGPEEKRIVTATQERPPFPRPVMPNAQRCPPLLTICEQPNQP TISLLPSSSSALPATSSAPEQEKQQLTSSSSVPEQGKQQSMSNPSVPEHGKQQPTSSSSMHEQEKWQPTSSSSVPGQENHHSVVSEQPVANLRVSREPII EEPLSPEPFILPDIEDFFYEDPDEIPVIKLNVEELAQNIETYLKQQNLDIRESDMSLDLVAMATEATYMPPPKLKNISRLRTEHQVYELPDRHRLLEKFD KREYDDPSPYLLAIWTPGETADSVSPPERRCTSQSEGRLCEEGTCPLCTSYLEAKRQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHESSLKPIEV PRSWLWNLPRRTVYFGTSVPTIFRGLTTEEIQQCFWRGKQAAILLLFISVLNDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10023864 [exp]	0	1
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	1.7	0.9574
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Lus10014367 [exp]	1.7	0.9498
AT4G15840			BTB/POZ domain-containing prot...		Lus10037522 [exp]	2.0	0.9454
AT5G65450		UBP17	ubiquitin-specific protease 17...		Lus10015894 [exp]	4.5	0.9502
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Lus10039199 [exp]	7.7	0.9360
AT1G55540		EMB1011	Nuclear pore complex protein (...		Lus10021859 [exp]	10.4	0.9277
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10013411 [exp]	10.6	0.9401
AT4G14920			Acyl-CoA N-acyltransferase wit...		Lus10010562 [exp]	11.0	0.9299
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	11.5	0.9377
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Lus10028403 [exp]	12.0	0.9371

Compare expression of checked genes

Lus10023864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.