Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03730 978 / 0 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT4G24480 622 / 0 Protein kinase superfamily protein (.1) AT1G73660 378 / 3e-116 protein tyrosine kinase family protein (.1) AT1G18160 375 / 2e-115 Protein kinase superfamily protein (.1) AT1G08720 369 / 7e-114 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT5G11850 367 / 9e-114 Protein kinase superfamily protein (.1) AT5G49470 338 / 4e-107 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 329 / 8e-101 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06620 330 / 2e-100 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G23050 325 / 4e-99 PAS domain-containing protein tyrosine kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014368 [exp] 1535 / 0 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10043428 [exp] 708 / 0 AT5G03730 710 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10034154 [exp] 625 / 0 AT5G03730 618 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10042868 [exp] 562 / 0 AT4G24480 988 / 0.0 Protein kinase superfamily protein (.1) Lus10028169 [exp] 514 / 2e-173 AT4G24480 823 / 0.0 Protein kinase superfamily protein (.1) Lus10027247 [exp] 382 / 4e-118 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10031341 [exp] 377 / 9e-118 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 372 / 7e-116 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10004124 [exp] 372 / 1e-115 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095750 [exp] 1059 / 0 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.006G115800 [exp] 1047 / 0 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.008G025800 [exp] 750 / 0 AT5G03730 670 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.010G234700 [exp] 742 / 0 AT5G03730 655 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.005G153100 [exp] 634 / 0 AT4G24480 1019 / 0.0 Protein kinase superfamily protein (.1) Potri.002G111200 [exp] 422 / 2e-133 AT4G24480 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.015G040100 [exp] 387 / 2e-119 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.005G047600 [exp] 374 / 3e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 374 / 3e-115 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 373 / 3e-114 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10023865 pacid=23160657 polypeptide=Lus10023865 locus=Lus10023865.g ID=Lus10023865.BGIv1.0 annot-version=v1.0 ATGGAAATGCCCGGCCGGAGATCCAACTACAGTCTCCTAAGTCAGTACCCGGACGAGCAGCTGTCGGCGGGGACTCCTCCGCCTCCCTATTACGACTCCT CCTTCTCCAGCGACTCCAAGGGTAACAGGTTGAAATCGGACAGAGTCTTCGATTGGGAAAGCGGCGGGGATCATAGGCTGAATCAGACAACGAATAATAA TAACAACAACAATAGCAACGGGAATCGGATTGGTGGGAATCCGAATTTGTACTCGTCGATCGGGCTGCAGAGGCAGTCTAGCGGGAGTAGCCTCGGGGAG AGCTCGTTGTCAGGGGAGTATTACGCGGCGACGCTTTCCACCGGCGGCGCGAATGAGATTGAGGCTTATGGATACATGCATAGAGGGATGGATGCGACGG CGGGGACCACGGTGGGACCTGGATCGTCCGGGAAGAGCTGGGCGCAGCAGACGGAAGAGAGTTACCAGCTGCAGTTGGCGTTAGCATTGAGATTATCGTC TGAAGCTACTTGTGCTGATGATCCCAATTTTTTGGATCCAGTGCCTGATGAATCTGCTTCTCGGTCTTCCAGCTCCAACTCTGCTGAGACCCTGTCTCAT CGCTTTTGGGTGAATGGTTGTTTATCATACTTTGATAAGATCCCAGATGGATTTTACCTTATTCGCGGGATGGACCCATATGTATGGTCTGTGTGCACTG ATTTTCAAGAGAATGGTCGTATTCCGTCAATTGAAACACTGAAGTCTGCTGATTCCAGTGCTGATACTTCATTGGAAGTGGTTTTAATTGATAGACGTAG TGACCCTACCTTGAAAGAACTTCAAACCAGAGTCCATAATATATCCTGCAACTGTATAACCACAAAGGAGGTTGTTGATCAACTGGCTAATCTTGTATGT AACCGAATGGGGGGTTCAGCGACTACAGGAGAAGATGAATTCATGTCCATATGGATGGAGTGCAATGACGATCTAAAAGATCGCTTGGGATCAATTGTTG TGCCTATTGGCAGCTTATCCGTTGGCCTCTGCAGACACCGAGCCTTGTTATTCAAAGTGCTTGCTGATGCAATAGATTTACCATGTCGAATTGCAAAAGG CTGCAAATATTGCAACAGAGATGATGCATCCTCCTGTCTTGTTCGATTTGGGTTTGACAGGGAGTACTTAGTCGATTTGGTAGGACAGCCTGGTTGTCTA TCTGAGCCAGATTCACTGCTCAATGGTCCTTCTTCCATCTCAATATCTTCGCCATTACGCTTTCCCCGGACCAAAGCAGCTCAACATGGCATTGATTTTA GGTCACTTGCCAAGCTGTACTTCTCAGACTGCCAGTCACTGAATATTGTATTTGATGATATTTCAGCAGCAGGCGTTCCCATTAATGATGAAGACTATAA GTTCCCCACAAGCAATGAAGTTTCTCAACCGCTTCTGCCGCCTAGAATTGGCCGTACTGGTGGTCAAGAAAAATATTCCCAACCTCCGAAAGCTTATACT CCTCCACAAAGTATCCAACCATCAAACATGCTCAAAGATCATACCGCAAATAAGCATTTGCCTCCCACTGGGCAACATCTTTTATCTGTACCTGCTCAGA GATTCGAAGCTAGTTCAGATTCAAGGTTCAATGAAGGCAGTCAATTGATTTCTGGTAGACCAAGCAAAGAACTATCGCTCGAGGTTGAGGATTTTGACAT CCCATGGAGTGATCTCGAGTTGAAAGAGAGGATTGGAGCAGGTTCTTTTGGGACTGTCCTTCGTGCTGATTGGCATGGCTCAGATGTTGCTGTGAAAATT CTCATGGAACAAGATTTTCATGCCGAGCGCTTCAATGAATTCTTGCGAGAGGTTGCAATTATGAAGCGCCTAAGACATCCAAATATAGTTCTATTCATGG GTGCTGTTACTAAACCACCAAATCTGTCTATTGTGACAGAATACTTATCAAGAGGTAGCTTATACAGGTTACTGCACAAGTCTGGTGCACGAGAGGCCTT GGATGAAAGACGTCGGTGGAATATGGCATATGATGTGGCAAAGGGAATGAATTATCTTCATAAGCGCAATCCTCCTATTGTGCATAGAGACTTGAAATCC CCCAATTTGTTGGTCGATAAAAAGTACACAGTGAAGGTTTGTGATTTTGGTCTTTCTCGGTTCAAAGCAAATACTTTTCTGTCATCAAAGTCAGCTGCAG GGACACCTGAGTGGATGGCCCCTGAAGTTCTACGTGATGAACCATCAAACGAGAAGTCGGATGTGTACAGCTTTGGTGTAATTCTGTGGGAGCTTGCGAC GTTACAGCAACCCTGGGGCAATTTAAACCCAGCACAGGTTGTAGCTGCAGTTGGTTTCAAATGCAAAAGGCTCGAGATTCCCCGGAATGTAAATCCTCTA ATAGCAAACATGATCGAGGCTTGCTGGGCTAACGAACCATGGAAACGACCTTCGTTTGCCAACATCATGGAATCCTTAAGGCCATTGATTAAACCTCCGA CGAATCCGCCAACAGCTCGTTCAGAGATGTCGTTACTTCCTTGA
AA sequence Show only first row Show all	>Lus10023865 pacid=23160657 polypeptide=Lus10023865 locus=Lus10023865.g ID=Lus10023865.BGIv1.0 annot-version=v1.0 MEMPGRRSNYSLLSQYPDEQLSAGTPPPPYYDSSFSSDSKGNRLKSDRVFDWESGGDHRLNQTTNNNNNNNSNGNRIGGNPNLYSSIGLQRQSSGSSLGE SSLSGEYYAATLSTGGANEIEAYGYMHRGMDATAGTTVGPGSSGKSWAQQTEESYQLQLALALRLSSEATCADDPNFLDPVPDESASRSSSSNSAETLSH RFWVNGCLSYFDKIPDGFYLIRGMDPYVWSVCTDFQENGRIPSIETLKSADSSADTSLEVVLIDRRSDPTLKELQTRVHNISCNCITTKEVVDQLANLVC NRMGGSATTGEDEFMSIWMECNDDLKDRLGSIVVPIGSLSVGLCRHRALLFKVLADAIDLPCRIAKGCKYCNRDDASSCLVRFGFDREYLVDLVGQPGCL SEPDSLLNGPSSISISSPLRFPRTKAAQHGIDFRSLAKLYFSDCQSLNIVFDDISAAGVPINDEDYKFPTSNEVSQPLLPPRIGRTGGQEKYSQPPKAYT PPQSIQPSNMLKDHTANKHLPPTGQHLLSVPAQRFEASSDSRFNEGSQLISGRPSKELSLEVEDFDIPWSDLELKERIGAGSFGTVLRADWHGSDVAVKI LMEQDFHAERFNEFLREVAIMKRLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGAREALDERRRWNMAYDVAKGMNYLHKRNPPIVHRDLKS PNLLVDKKYTVKVCDFGLSRFKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKRLEIPRNVNPL IANMIEACWANEPWKRPSFANIMESLRPLIKPPTNPPTARSEMSLLP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10023865 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	1.0	0.9433
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10021478 [exp]	11.7	0.8978
AT5G15640			Mitochondrial substrate carrie...		Lus10035134 [exp]	16.2	0.8666
AT4G01290			unknown protein		Lus10007916 [exp]	21.2	0.7788
AT5G44240		ALA2	aminophospholipid ATPase 2 (.1...		Lus10039855 [exp]	22.2	0.8254
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	22.4	0.8647
AT1G61240			Protein of unknown function (D...		Lus10011228 [exp]	26.5	0.8521
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031696 [exp]	27.1	0.8744
AT1G31480		SGR2	shoot gravitropism 2 (SGR2) (....		Lus10041056 [exp]	27.3	0.8142
AT4G10050			esterase/lipase/thioesterase f...		Lus10006170 [exp]	38.5	0.8245

Compare expression of checked genes

Lus10023865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.