Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03720 296 / 1e-96 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT1G32330 199 / 2e-58 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT3G22830 189 / 1e-55 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT2G26150 182 / 1e-53 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT5G16820 183 / 1e-52 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT4G17750 183 / 2e-52 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT3G02990 181 / 8e-52 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G51910 172 / 9e-51 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G54070 165 / 5e-47 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT5G43840 162 / 1e-46 HSF AT-HSFA6A heat shock transcription factor A6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014369 [exp] 703 / 0 AT5G03720 307 / 6e-101 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Lus10011065 [exp] 204 / 2e-60 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 201 / 3e-59 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10040091 [exp] 196 / 2e-57 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 195 / 5e-57 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10039376 [exp] 186 / 1e-54 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 185 / 7e-54 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 177 / 5e-51 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 177 / 5e-51 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115700 [exp] 351 / 9e-117 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) Potri.005G214800 [exp] 199 / 7e-60 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 195 / 3e-58 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 194 / 5e-58 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G138900 [exp] 197 / 2e-57 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 195 / 1e-56 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.010G082000 [exp] 184 / 4e-54 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.013G079800 [exp] 181 / 2e-51 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G226800 [exp] 176 / 1e-50 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.014G141400 [exp] 167 / 1e-46 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10023866 pacid=23160745 polypeptide=Lus10023866 locus=Lus10023866.g ID=Lus10023866.BGIv1.0 annot-version=v1.0 ATGAACCCAGAGGACGATAACTACTCGGAATCACCTGACGCCAGCTCAATCCCCGTGTGCTCAGTTATGGAGGAAATGACCATTCCTGCTTCTCCATTAA TGGCCTTCGAGGATTCCTCGCAGGCTTTCGAGTTCAAAGCTGAGCCATTAATCCCTCCGGTTGGGATTATTCCTCAGCCGCTTTCGATTCTGCAGGAAAC CCCGGTTCCGCCGTTCCTGTCCAAGACATTCGACCTGGTGGATGATCAGGGACTGGATCCCGTGATTTCGTGGGGCGGAAGGGGAGAGAGTTTCGTGGTT TGGGATCCAGTGGAGTTCTCCAGAACTATACTCCCTCGCAATTTCAAGCACAACAATTTCTCCAGCTTTGTTCGGCAGCTCAATACTTATGTGGGTACTT TTGCTGGTAACGGCAGCAGCTTGCTAAAAGCTTCTGTGGGGTTCCGCAAAGTGGATGCTGACAAGTGGGAGTTTGCCAACGAAGGCTTTCGACAAGGTCA GAGGCACCTTCTCAGGAACATTCAAAGGCGCAAGCCTCCGCAGATGAGTACCTATGTTGTCGAATCGGTGGACACCGAGGTGGAGAGATTGAGGAAGGAG GAGGGTATAATGATGCAGGAAGTTGTGCAGCTTCAACGGCAGCAAAGAGGATATGTGAAGCATATAGAGACTGTTAACAAAAGGATTCAAGATGCAGAAC AAAGGCAGAAGCAAATGCTCTCATTCCTCGCTAAGTTGTTCCACAACCGAGCATTCCTAGACCGTCTGAAGCAAAGCAAAGAGCCAAGGACGACGAGGAA GAAATTCATAAGACACAACCAACCCGAGTCATCTACTCAGCCACCTGATTATGCGTTGGCAGGGATAGTAGAAGAAGGTTTGCCATTTGAAATGGAGACG TTTGTATCGGATGACCTCGGATTGGGGCAAGAAGAAGAAGAACCCATCATCCCTCCGCAGCAGATTCAAGGAAAGGCAACGACTTTGCAAAGTGAGGAAC TTTATTATAAAGGGAAACATGTAATGGGTCCCCAACAGCAAGAATTTGGTCCAGAATATTTGGTCTCCTTCCCTGAGGATGCATGGAGTATGGGATTTGA CACACGTCCTGTTATATCTTGTCCTGGTAATGAGCTGTGGGATGATATGGTCCGGTATGATGTGCCGGAGTTTGGAGGATTTGCAGGTGGGTTCTCTGAC ATCTGGGACTTGGGTTCATCACAAGGAGCAGGAAGTTCAAGTGTTGACAAGCAGCTAGCTGATGAAAGCCTACTTAATGAGCCTCCTACTGATAATATTT CTAGTCTGAACAACTTAGATGCGTAG
AA sequence Show only first row Show all	>Lus10023866 pacid=23160745 polypeptide=Lus10023866 locus=Lus10023866.g ID=Lus10023866.BGIv1.0 annot-version=v1.0 MNPEDDNYSESPDASSIPVCSVMEEMTIPASPLMAFEDSSQAFEFKAEPLIPPVGIIPQPLSILQETPVPPFLSKTFDLVDDQGLDPVISWGGRGESFVV WDPVEFSRTILPRNFKHNNFSSFVRQLNTYVGTFAGNGSSLLKASVGFRKVDADKWEFANEGFRQGQRHLLRNIQRRKPPQMSTYVVESVDTEVERLRKE EGIMMQEVVQLQRQQRGYVKHIETVNKRIQDAEQRQKQMLSFLAKLFHNRAFLDRLKQSKEPRTTRKKFIRHNQPESSTQPPDYALAGIVEEGLPFEMET FVSDDLGLGQEEEEPIIPPQQIQGKATTLQSEELYYKGKHVMGPQQQEFGPEYLVSFPEDAWSMGFDTRPVISCPGNELWDDMVRYDVPEFGGFAGGFSD IWDLGSSQGAGSSSVDKQLADESLLNEPPTDNISSLNNLDA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	0	1
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	1.0	0.9690
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10025128 [exp]	4.0	0.8596
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	7.6	0.8703
AT4G11170			Disease resistance protein (TI...		Lus10010222 [exp]	9.7	0.8564
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10033079 [exp]	10.0	0.8379
AT1G03390			HXXXD-type acyl-transferase fa...		Lus10017744 [exp]	10.8	0.8026
AT3G07200			RING/U-box superfamily protein...		Lus10022569 [exp]	11.6	0.8700
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	11.8	0.8474
AT3G42770			F-box/RNI-like/FBD-like domain...		Lus10021833 [exp]	12.7	0.8392
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10012391 [exp]	14.8	0.8334

Compare expression of checked genes

Lus10023866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.