Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36480 246 / 5e-68 ENTH/VHS family protein (.1.2.3) AT4G04885 190 / 1e-49 PCFS4 PCF11P-similar protein 4 (.1) AT2G36485 112 / 1e-28 ENTH/VHS family protein (.1) AT5G43620 84 / 2e-16 Pre-mRNA cleavage complex II (.1) AT1G66500 81 / 1e-15 C2H2ZnF Pre-mRNA cleavage complex II (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014370 [exp] 1425 / 0 AT2G36480 248 / 2e-69 ENTH/VHS family protein (.1.2.3) Lus10027715 [exp] 846 / 0 AT2G36480 363 / 2e-110 ENTH/VHS family protein (.1.2.3) Lus10035573 [exp] 513 / 2e-163 AT2G36480 362 / 4e-110 ENTH/VHS family protein (.1.2.3) Lus10018357 [exp] 191 / 2e-49 AT4G04885 653 / 0.0 PCF11P-similar protein 4 (.1) Lus10007652 [exp] 190 / 3e-49 AT4G04885 343 / 1e-104 PCF11P-similar protein 4 (.1) Lus10006766 [exp] 184 / 2e-47 AT4G04885 650 / 0.0 PCF11P-similar protein 4 (.1) Lus10020058 [exp] 184 / 2e-47 AT4G04885 633 / 0.0 PCF11P-similar protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115600 [exp] 691 / 0 AT2G36480 268 / 3e-76 ENTH/VHS family protein (.1.2.3) Potri.004G020300 [exp] 198 / 1e-51 AT4G04885 386 / 9e-120 PCF11P-similar protein 4 (.1) Potri.011G024800 [exp] 181 / 3e-46 AT4G04885 364 / 1e-111 PCF11P-similar protein 4 (.1) Potri.017G017800 [exp] 101 / 1e-21 AT4G04885 194 / 3e-53 PCF11P-similar protein 4 (.1) Potri.007G134000 [exp] 45 / 0.0002 AT4G04885 101 / 2e-22 PCF11P-similar protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF04818 [flax] [poplar] CID CID domain
Representative CDS sequence Show only first row Show all	>Lus10023867 pacid=23160669 polypeptide=Lus10023867 locus=Lus10023867.g ID=Lus10023867.BGIv1.0 annot-version=v1.0 ATGGAGAGCATGCGTAGATCGCTGGACAGATCAAGGCAACCTGGTTTGAAGAAACCTCGATTAGCGGAGGACCAACCAAACCCTAGCGGCGGCAGCAATC CTTTCGTCCGGAGGCCTCCACCCACAGCGGCAGCGGCGGCGGCTGCTTCCTCGAGGTTTAGGGCTGCCGGCGATAGAGACTCGGGGAGTAATGATACGGT GAGGGGCGGTGATGCGTACCACCCTCAGCCATTACACCAGAATCAGGTTCAGGAACTGGTGAATCAGTACAAGACTGCTCTAGCGGAGCTGACTTTCAAC TCCAAGCCAATTATTACTAACTTGACTATAATTGCTGGGGAGAATGTCTCAGCAGCGAAGGCCATTGCTGCAACTGTCTGCAATCACATTATTGAGGTTC CAAGTGAGCAGAAGCTGCCATCACTTTATCTATTAGACAGCATTGTCAAAAATATTGGGAGGGACTATGCAAAACATTTTGCGCCGAGATTACCAGAGGT ATTTGGCAAGGCTTATAGGCAGGTGGATCCTCCTATTCAATCCAGCATGCGGCATTTGTTTGGAACTTGGAAAAACGTCTTTCCTGTCCAGTGCCTTCAG ACGATAGGGGAGGAACTTGGATTTTCTTCTGCAACAAATGGATCATCTTCAGGAACTGTGACATCAAGATCTGATGCTCAGTCACAACGCCCACAGCATA GCATTCATGTGAATCCAAAATACTTGGAAAGGCAACAGCGCCTTCAGCAGTCAGGCAGGGCGCCAACAGTGGACTCACCTGAGGATATCAACAGGCCAGA GAGAATTTCTAGTATTGTAACTTCACGCGCATGGACAGATTCAGCTGTTAAACTACATGATATCCAGCGTAGCCAAAGGATAACACCAAGCCCCATTCAG GAGAAGAACATTGGTCAATTGTATGGAGACTTGGAATATGAAACTGATACTTCAAGGAACTCAGGCTTGGGATCTGGACTCACAGGTACCAGGGCTACTG AACAAGGACATGGAAAACCTTGGTATGGGGAGGCAGAATTTGTTCCCAGGAAATTGTCTGATCCACGACTTGGGTTCAGTATGAAGCAAGGAGGGGCTGA TCATTTGATTCCCAAGGCCACTAAAGTTATTCACCAACAGCCAACAGAAAGCGTTGCGCGTAGAAGTGATAATAACATTTCTACCGGCTGGAAAAACTCC GAGGAGGAGGCAGAAATTGTTCCCAGGAAGTTGTCTGATCCAAGACTTGGGTTCAGTAGGAAGCGTGGAGTGGCTGATCATTTGATTCCCAAGTCCACTA AAGCTGTTCACATACAGCCAACAGAGAGCATTGCCCATAGAAGTGACAATGACATTTCCAACAGCTGGAAGAACTCTGAAGAAGAGGAGTTCATGTGGGA TATGCACTCCAGATTGCCTGATCAAGATGTTGCAAACCTCTCTGATGACTCTAGGAAAGATCCTTGGATCCCCAGTGATCCTGAGAAATTGGGGTTTGAA AATCGTGTTAGAAGGCCTCGAATTGCACATGAAGTTGGGTCTGGGTTTGATAGAGAGTCTTCGTCAGATTCATTATCCACCGAACAGAGAGAGCGGCTTA GTTATGGGAACCGTTTGCCTTCTCCGTGGAGACTGCAAGATGCATCCTCAGTGGACGAGCTATTGTTTTCTGGTTCTACCACTAAACCCAGTTATGCCGA GGCCATTAAAGCTAGTAGTGGTGGGTTCCCATCTGTCACAAATTCTGTATCTAGTATTGCAGCAGGACCTCGTGCAAGCTCCCCTCATGATGTAGCGTCA GGTTTTGGAGTCCCTGCTGCGACCTCTAGTCAACAGAGATTCCCTTCCGTCAGGGCTGCATCGCCACCCCATAATTCGTCACTACACCCAGCCCCATCAA GTGCCTCACTTCCATTGCGATATCTTCCTAGGCAATTGCCAAATGCAGCTGACCAGGACTCCTCACAAGTCTTACCTCAATCTCATCAGAAGGTACATCA ATTCTCAAGAAGTTTGCTTCCTCAAAATGTTCCTTCAGGCAATGTGAACAAGTTTCAGTCGGAAGATTTGCAATCTTCCTCAGTAGTGGCTTCTGTTCAA CAAGATCGCCAGTATTCTATTCCTCGGGATCAACAACTGGACTTTGGATTGTCTGAATCGTTTGGTCCATGTCAGAAACAAAACCCAATTCTGGATTGTA ATGCTGGAGCTCCATCAACATCAGGAAGTTCCGGGTTAGACCAATCCATTCAACATACTAGGGGAACTTCAGGCGAATCAAGTACCAGTAGTTTATTAGC GGCTGTTATGAAGAGTGGAATTTTGTCAAATATAACCACTGGTGGTTTGGCTAAAAAGAGTTTGCAGGATAGTGGCCAAGTTACATCAAAATCGAGTACT AAATCTCTGCCCCCTGCTACCCAAGTCAAATCTTTTGGTCCTCAGAGTATTTCCACTTCTTCAATACGCCCTGTGCTGCGTGATTCAAAGTCATATACTT CAAAAGTAGCTCAGAAGGAAAAGCAGCAGCAATTGCCACTAGGTTTACCAGCATCGCTGAAACAGACTTCAAAAACGGCAGAGACAGAGTCAAACCCCAT TTCGAATCTGTTGAGCTCATTACTTGTGAAAGGTCTTATAAAGTCAGAGGTGTCCTCTGCATCATCATGTCAGGTTACCCCGGAACCAGAGAATCTGACG ATAAGTGCCGTCAATCCTAAAACAGCTCCTGTTTCTTCTCTGTCAAAGCTTATTTCCACAGCAGGTGAAAAATCTCTTGCAAAACCTGATGCGAATAGTT CTTCCAATTTTCCCAAGTCTAACCCAGTGATTCTGAAGCCTGACACAAAGGATTGTGTGAATATGCCTCAATCTGTCTCAGTGAAGACTGAATGTCTTCT TGGATTGAAGTTTAAGTCCAATTTAGTTCGAGAATTTCATCCAGATGTCATTGATTCCCTTTTTGATGGCCTTCCTCACCAATGCAATGTATGTGGATTC CGACTTAAAGACAAAGAGCGGCTTGACAAGCATTTGCAGTGGCATAATGAAAGACAGGCTGATCTTGATGTGAGAACAGCTACAAGGAGATGGTATGTAA AGACTGAGGATTGGATTTCTCCAAAGGTGAACATTCCTCCTGCAGTAGATTCGTCTCACGTGAATGCCCTTCAGAATGTAACAGATGGTAACGCCTGCCA GAACGTAATGGATCTCGATGATGCCATGACTCCTGCAGACGAAGACCAATGCGTATGTGTCTTGTGTGGTGAGCTATTTGAAGATTATTATAGCCCTGAA AGGAATAAGTGGATGTTTAGAGGAGCTGTGCGCATGAATATTGCTTCGGGTTATGGTAAGCAAGGAAAGATGGATGACTCCTCTCTTAACGGTCCTCTAG TGCATTTGCAATGTCGCTCAGAAGGTTCAGCCAGTGAGTTGGGTCTTTCAAATAGTGTAAAAATGGTAAGTTTATGA
AA sequence Show only first row Show all	>Lus10023867 pacid=23160669 polypeptide=Lus10023867 locus=Lus10023867.g ID=Lus10023867.BGIv1.0 annot-version=v1.0 MESMRRSLDRSRQPGLKKPRLAEDQPNPSGGSNPFVRRPPPTAAAAAAASSRFRAAGDRDSGSNDTVRGGDAYHPQPLHQNQVQELVNQYKTALAELTFN SKPIITNLTIIAGENVSAAKAIAATVCNHIIEVPSEQKLPSLYLLDSIVKNIGRDYAKHFAPRLPEVFGKAYRQVDPPIQSSMRHLFGTWKNVFPVQCLQ TIGEELGFSSATNGSSSGTVTSRSDAQSQRPQHSIHVNPKYLERQQRLQQSGRAPTVDSPEDINRPERISSIVTSRAWTDSAVKLHDIQRSQRITPSPIQ EKNIGQLYGDLEYETDTSRNSGLGSGLTGTRATEQGHGKPWYGEAEFVPRKLSDPRLGFSMKQGGADHLIPKATKVIHQQPTESVARRSDNNISTGWKNS EEEAEIVPRKLSDPRLGFSRKRGVADHLIPKSTKAVHIQPTESIAHRSDNDISNSWKNSEEEEFMWDMHSRLPDQDVANLSDDSRKDPWIPSDPEKLGFE NRVRRPRIAHEVGSGFDRESSSDSLSTEQRERLSYGNRLPSPWRLQDASSVDELLFSGSTTKPSYAEAIKASSGGFPSVTNSVSSIAAGPRASSPHDVAS GFGVPAATSSQQRFPSVRAASPPHNSSLHPAPSSASLPLRYLPRQLPNAADQDSSQVLPQSHQKVHQFSRSLLPQNVPSGNVNKFQSEDLQSSSVVASVQ QDRQYSIPRDQQLDFGLSESFGPCQKQNPILDCNAGAPSTSGSSGLDQSIQHTRGTSGESSTSSLLAAVMKSGILSNITTGGLAKKSLQDSGQVTSKSST KSLPPATQVKSFGPQSISTSSIRPVLRDSKSYTSKVAQKEKQQQLPLGLPASLKQTSKTAETESNPISNLLSSLLVKGLIKSEVSSASSCQVTPEPENLT ISAVNPKTAPVSSLSKLISTAGEKSLAKPDANSSSNFPKSNPVILKPDTKDCVNMPQSVSVKTECLLGLKFKSNLVREFHPDVIDSLFDGLPHQCNVCGF RLKDKERLDKHLQWHNERQADLDVRTATRRWYVKTEDWISPKVNIPPAVDSSHVNALQNVTDGNACQNVMDLDDAMTPADEDQCVCVLCGELFEDYYSPE RNKWMFRGAVRMNIASGYGKQGKMDDSSLNGPLVHLQCRSEGSASELGLSNSVKMVSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10023867 [exp]	0	1
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10014370 [exp]	1.0	0.9446
AT3G18100	MYB	ATMYB4R1	myb domain protein 4r1 (.1.2.3...		Lus10009636 [exp]	4.2	0.8706
AT3G48060			BAH domain ;TFIIS helical bund...		Lus10033410 [exp]	4.5	0.9030
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	7.5	0.8761
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Lus10036271 [exp]	10.2	0.8996
AT3G17850			Protein kinase superfamily pro...		Lus10031332 [exp]	11.2	0.8834
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	11.7	0.8684
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10008949 [exp]	14.7	0.8873
AT1G64570		DUO3	DUO POLLEN 3, Homeodomain-like...		Lus10001147 [exp]	15.4	0.8791
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10027715 [exp]	16.1	0.8669

Compare expression of checked genes

Lus10023867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.