Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03700 448 / 3e-154 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT4G32300 94 / 3e-20 SD2-5 S-domain-2 5 (.1) AT1G78860 91 / 1e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 91 / 1e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT5G35370 91 / 5e-19 S-locus lectin protein kinase family protein (.1) AT1G16905 87 / 3e-18 Curculin-like (mannose-binding) lectin family protein (.1) AT1G78830 79 / 2e-15 Curculin-like (mannose-binding) lectin family protein (.1) AT1G11280 76 / 2e-14 S-locus lectin protein kinase family protein (.1.2.3.4) AT4G21380 73 / 3e-13 ARK3 receptor kinase 3 (.1) AT1G61500 72 / 3e-13 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014371 [exp] 871 / 0 AT5G03700 469 / 2e-162 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10024348 [exp] 87 / 6e-18 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10018405 [exp] 86 / 2e-17 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10000579 [exp] 84 / 5e-17 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 81 / 9e-16 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 79 / 4e-15 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 77 / 9e-15 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10007603 [exp] 74 / 9e-14 AT4G21380 942 / 0.0 receptor kinase 3 (.1) Lus10007602 [exp] 74 / 2e-13 AT1G65800 788 / 0.0 receptor kinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G016900 [exp] 466 / 5e-161 AT5G03700 479 / 2e-166 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.019G013797 [exp] 100 / 2e-22 AT5G35370 751 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G005900 [exp] 93 / 5e-20 AT1G78850 371 / 1e-125 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110200 [exp] 91 / 2e-19 AT1G78860 398 / 4e-136 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 91 / 2e-19 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.006G053700 [exp] 91 / 6e-19 AT2G41890 765 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.011G110500 [exp] 86 / 7e-18 AT1G78850 404 / 8e-139 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.002G086500 [exp] 85 / 3e-17 AT5G35370 952 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G110000 [exp] 82 / 1e-16 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.016G053800 [exp] 83 / 2e-16 AT2G41890 768 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0168 [flax] [poplar] PAN PF00024 [flax] [poplar] PAN_1 PAN domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10023868 pacid=23160753 polypeptide=Lus10023868 locus=Lus10023868.g ID=Lus10023868.BGIv1.0 annot-version=v1.0 ATGAAACCACCTCCCATTGCTTTAACTCGGTTCCTTTCCCTTCTACTCATCTTCATTTCCTCCTCCTCGGCCGCCGCCGACGATGCCGCACAAACCGAGC TTCTACCGGGGTTCAAAGCAGCTCCAGAGCCTTCCACATCAACCTTTCAGCCGATTCTCAAGGACCCATCTGGCAATTTCTCACTCGGTTTCCTCCGGCT CGACTCGGACCACCAGTTCGCTTTCGCAGTCGTCCACATCCCTTCCCTCCAACCAATCTGGCAGCCCAACCCAACCTGGTCGGACCAGACAACGAGTCAG ACTCAACTCTCCTTCAATGGCACCCTCGTAATTTCCGACTCTCGCTCCCGCATTCTCTGGTCCACCACCGGTTCTAATACTGCAGGCGACAGAGTCGTTT TACTCAAAAACTCCAACCTACAAGTGCTGCGAAACGACGCCGTTGTCTGGCAGAGCTTCGACTACCCAGCAAACACCCTCGTTCAGGGCCAAAATTTCAC TTCTGCCACTTCCTCCGACGACCGTTACGCCCTCCGATTGGGGTACGATTTCATGGCCTTATACGCAGACTTCTCCGGAAAGGGCGATCCGGATCGAATT TACTGGAAGCACAAAGCCCTCGAGGCGCGAGCCGACGTCGTGCCGGGTCAGGGCCCGATCCACGCGCGTGTGGACCCGATCGGGTTCATCGGGATGTACC AATCAATTAACGGCTCCGTCCCAATCGACGTCCAGGCTTTCAACAGCTTCCGCCGTCAAGTCAACGGGTTTCACATCGTCCGTCTGGAAACTGACGGAAA CCTGAAGGCTTACAATTGGGACGGAAGCAACTGGGTCCTCGATTACCAGGCCATACCTGACTTCTGCGACCTGCCCCATCCGTGCGGGTCTTACGGGTTA TGCCGACCCGGTCCCACCTGCTCTTGTCTGGACAACTCAACCGCGTTTGGTTTCCGTCGGGGTCAGTCGGGTCAGTGTTTATCCGCGGAGTCAGGCGATT TTTGTGGCGGGCAGAGACCCGGCGAACCCGGTTTCCGGGTGTTGAGGAGTAACAAGGTGGATTTGCCGTTTAAGGAGCTGATGAGCTACAAAACGGCGCC GTCGATGACTGAATGCGAGGGGTTGTGCGAGAATAACTGCACGTGTTGGGGAGCGGTGTACAATAACGCATCCGGGTTCTGTTACCTGGTGGATTACCCG ATCCAGACGGTGTTGGGAGTGGGCGACGAGGGCAAATTAGGCTACTTCAAGGTGAAAAACGAAGGGGCGGCAAATGACCGGAAGGGAGTTGGGTCGGGAG TGCGGATCGGGTTGGTGTGCGGGGCGGTTTTGGTTTTGGCGGGAGCGGTTGGGGCGGGGAGTTACAATGGTTGGAAGAAGTACAAGAGGAGAAGGAATCG GATACTGGAAGAGGATGGAGTGTCGGAGCCCGGCCCGTACAAGGGACTCGGGTCGGATAGTTTTAGATCGGTTGAGATGTCCGATAGAAGATGA
AA sequence Show only first row Show all	>Lus10023868 pacid=23160753 polypeptide=Lus10023868 locus=Lus10023868.g ID=Lus10023868.BGIv1.0 annot-version=v1.0 MKPPPIALTRFLSLLLIFISSSSAAADDAAQTELLPGFKAAPEPSTSTFQPILKDPSGNFSLGFLRLDSDHQFAFAVVHIPSLQPIWQPNPTWSDQTTSQ TQLSFNGTLVISDSRSRILWSTTGSNTAGDRVVLLKNSNLQVLRNDAVVWQSFDYPANTLVQGQNFTSATSSDDRYALRLGYDFMALYADFSGKGDPDRI YWKHKALEARADVVPGQGPIHARVDPIGFIGMYQSINGSVPIDVQAFNSFRRQVNGFHIVRLETDGNLKAYNWDGSNWVLDYQAIPDFCDLPHPCGSYGL CRPGPTCSCLDNSTAFGFRRGQSGQCLSAESGDFCGGQRPGEPGFRVLRSNKVDLPFKELMSYKTAPSMTECEGLCENNCTCWGAVYNNASGFCYLVDYP IQTVLGVGDEGKLGYFKVKNEGAANDRKGVGSGVRIGLVCGAVLVLAGAVGAGSYNGWKKYKRRRNRILEEDGVSEPGPYKGLGSDSFRSVEMSDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	2.0	0.9538
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	2.6	0.9414
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10010067 [exp]	3.5	0.9488
AT5G03700			D-mannose binding lectin prote...		Lus10014371 [exp]	3.7	0.9512
AT5G59613			unknown protein		Lus10005899 [exp]	3.9	0.9466
AT3G57450			unknown protein		Lus10016391 [exp]	5.1	0.9274
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10010427 [exp]	6.0	0.9434
AT2G23810		TET8	tetraspanin8 (.1)		Lus10023216 [exp]	6.3	0.9388
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Lus10021846 [exp]	6.3	0.9413
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	6.9	0.9299

Compare expression of checked genes

Lus10023868 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.