Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27770 186 / 6e-57 Plant protein of unknown function (DUF868) (.1) AT2G36470 182 / 5e-55 Plant protein of unknown function (DUF868) (.1) AT3G04860 119 / 1e-31 Plant protein of unknown function (DUF868) (.1) AT5G28150 117 / 1e-30 Plant protein of unknown function (DUF868) (.1) AT4G12690 91 / 4e-21 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 90 / 2e-20 Plant protein of unknown function (DUF868) (.1) AT2G04220 89 / 5e-20 Plant protein of unknown function (DUF868) (.1) AT5G11000 84 / 4e-18 Plant protein of unknown function (DUF868) (.1) AT3G13229 79 / 7e-17 Plant protein of unknown function (DUF868) (.1) AT2G25200 60 / 6e-10 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014372 [exp] 485 / 3e-174 AT2G27770 201 / 8e-63 Plant protein of unknown function (DUF868) (.1) Lus10009405 [exp] 135 / 4e-37 AT2G27770 234 / 5e-75 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 110 / 7e-28 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 107 / 7e-27 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10022050 [exp] 97 / 1e-22 AT5G28150 310 / 2e-105 Plant protein of unknown function (DUF868) (.1) Lus10042600 [exp] 93 / 2e-21 AT5G28150 310 / 3e-105 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 88 / 1e-19 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10019467 [exp] 84 / 3e-18 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10017128 [exp] 84 / 4e-18 AT5G11000 245 / 1e-78 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G116200 [exp] 258 / 5e-85 AT2G27770 249 / 2e-81 Plant protein of unknown function (DUF868) (.1) Potri.004G187600 [exp] 201 / 5e-63 AT2G27770 305 / 2e-103 Plant protein of unknown function (DUF868) (.1) Potri.009G148300 [exp] 199 / 5e-62 AT2G27770 308 / 7e-105 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 125 / 1e-33 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 121 / 3e-32 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 115 / 6e-30 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 104 / 8e-26 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.004G098000 [exp] 100 / 1e-25 AT2G36470 99 / 3e-25 Plant protein of unknown function (DUF868) (.1) Potri.006G261300 [exp] 102 / 2e-24 AT5G11000 295 / 3e-97 Plant protein of unknown function (DUF868) (.1) Potri.013G036400 [exp] 94 / 9e-22 AT3G04860 137 / 3e-38 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10023869 pacid=23160731 polypeptide=Lus10023869 locus=Lus10023869.g ID=Lus10023869.BGIv1.0 annot-version=v1.0 ATGAGGAGCATCGCCACCTGTTACAGCGAACACGCCATCAAAGTCTCCGATTCCTACTGCTCCGGCCCATCAACCCGACCCACTACCACCACCATCCCCC GCAGCCTGATCAAATGCCCAGTCCCGTCTTCCATCACCTCTACCTACAAAATCGCCAAAGGAATCTTCGCCGCCGTCAACTGGTCGGACGGCCATGGCTT CTCCTTCTCAATAACCGAAAAAACCCCGCCGCCAAATTCGGATTCCCCTTCTTCTTTCCATCGTTTTCGGAAGCTAAAAGGGAGCAAGGAATTCCAAGCC TGCGGTTTGAACATCGAGCTGTTCTGGGACCTCTCGTTGGCATCGTATTACGATTCGGGACCGGAGCCGGCCAGCGGGTTCTACATCGTGGTATTGGTCG ATTCGCATCCGGCTTTGTTCCTCGGAGACGTCGACGAGAGTGAGGAGGAAGGCGAATTGGAATTCAACGCTGAGATTAAAAGAGCAGAGTTCTCCCCGAT TTCTCGAATTGAGAAATTCGGGTCTCAATCGGGGTCGGGTTACTCGACGCGGGCGCAGTTCAGCAAGGTGGGCGAAGCGCACGACGTGGCGATCAGGTTC GGGTCGGGCGAGGACGGAGCCGTGAAGAGAGACCTGGAGGCGGCGGGGGAGATGATGTCAGTTTGGATTGACGGGAGGAAGGCTTTCCAGGTGAAGAGGC TGAAGTGGAATTTCAGAGGGAATCAGACGGTTTTCCTGGACGGGATTTTAGTGGACGTTATGTGGGATTTACACAGCTGGTTTTCCGCCATGGAAACAGG GGATCATGATCGTGGTGGAGGTGTGTTTATGTTCAGGACTAGAAGCGGATTCGACAGCAGGCTTTGGCTAGATGAGAAGAAGACTAAGGATCCTGAACGG GATGAGTTTTCTCTCGTCATTTGTTTGTTAAAGGATCGCCGTCGATGA
AA sequence Show only first row Show all	>Lus10023869 pacid=23160731 polypeptide=Lus10023869 locus=Lus10023869.g ID=Lus10023869.BGIv1.0 annot-version=v1.0 MRSIATCYSEHAIKVSDSYCSGPSTRPTTTTIPRSLIKCPVPSSITSTYKIAKGIFAAVNWSDGHGFSFSITEKTPPPNSDSPSSFHRFRKLKGSKEFQA CGLNIELFWDLSLASYYDSGPEPASGFYIVVLVDSHPALFLGDVDESEEEGELEFNAEIKRAEFSPISRIEKFGSQSGSGYSTRAQFSKVGEAHDVAIRF GSGEDGAVKRDLEAAGEMMSVWIDGRKAFQVKRLKWNFRGNQTVFLDGILVDVMWDLHSWFSAMETGDHDRGGGVFMFRTRSGFDSRLWLDEKKTKDPER DEFSLVICLLKDRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27770			Plant protein of unknown funct...		Lus10023869 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Lus10035811 [exp]	1.7	0.8951
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Lus10013552 [exp]	6.3	0.9123
AT4G15450			Senescence/dehydration-associa...		Lus10012957 [exp]	10.2	0.8968
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10011827 [exp]	13.7	0.8876
AT1G24620			EF hand calcium-binding protei...		Lus10007816 [exp]	15.3	0.8845
					Lus10017954 [exp]	15.5	0.8847
AT5G39020			Malectin/receptor-like protein...		Lus10025544 [exp]	18.2	0.8750
AT5G61820			unknown protein		Lus10033851 [exp]	18.3	0.8606
					Lus10018997 [exp]	19.8	0.8828
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Lus10021887 [exp]	26.2	0.8317

Compare expression of checked genes

Lus10023869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.