Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36460 630 / 0 Aldolase superfamily protein (.1.2) AT5G03690 617 / 0 Aldolase superfamily protein (.1.2) AT3G52930 616 / 0 Aldolase superfamily protein (.1) AT4G26530 577 / 0 Aldolase superfamily protein (.1.2) AT4G26520 530 / 0 Aldolase superfamily protein (.1) AT2G01140 400 / 8e-139 PDE345 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) AT4G38970 399 / 3e-138 FBA2 fructose-bisphosphate aldolase 2 (.1.2) AT2G21330 396 / 4e-137 FBA1 fructose-bisphosphate aldolase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014373 [exp] 729 / 0 AT2G36460 629 / 0.0 Aldolase superfamily protein (.1.2) Lus10027717 [exp] 650 / 0 AT3G52930 622 / 0.0 Aldolase superfamily protein (.1) Lus10035571 [exp] 640 / 0 AT5G03690 604 / 0.0 Aldolase superfamily protein (.1.2) Lus10032956 [exp] 579 / 0 AT4G26530 635 / 0.0 Aldolase superfamily protein (.1.2) Lus10035473 [exp] 388 / 5e-134 AT4G38970 671 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10031088 [exp] 388 / 8e-134 AT4G38970 674 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Lus10013477 [exp] 300 / 3e-98 AT2G01140 481 / 1e-168 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10007940 [exp] 288 / 1e-95 AT2G01140 507 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Lus10034619 [exp] 282 / 7e-91 AT2G01140 457 / 1e-158 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G090100 [exp] 649 / 0 AT3G52930 620 / 0.0 Aldolase superfamily protein (.1) Potri.006G165700 [exp] 632 / 0 AT2G36460 634 / 0.0 Aldolase superfamily protein (.1.2) Potri.001G468100 [exp] 562 / 0 AT4G26530 629 / 0.0 Aldolase superfamily protein (.1.2) Potri.011G165000 [exp] 560 / 0 AT4G26530 628 / 0.0 Aldolase superfamily protein (.1.2) Potri.009G124100 [exp] 402 / 9e-140 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.007G015500 [exp] 402 / 1e-139 AT4G38970 703 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.004G162400 [exp] 400 / 1e-138 AT4G38970 704 / 0.0 fructose-bisphosphate aldolase 2 (.1.2) Potri.008G125900 [exp] 399 / 2e-138 AT2G01140 700 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1) Potri.010G117900 [exp] 392 / 9e-136 AT2G01140 697 / 0.0 PIGMENT DEFECTIVE 345, Aldolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0035 [flax] [poplar] Peptidase_MH PF00274 [flax] [poplar] Glycolytic Fructose-bisphosphate aldolase class-I
Representative CDS sequence Show only first row Show all	>Lus10023870 pacid=23160719 polypeptide=Lus10023870 locus=Lus10023870.g ID=Lus10023870.BGIv1.0 annot-version=v1.0 ATGTCTTGCTACAAGGGCAAATACGCCGATGAGCTTGCTGCTAATGCTGCCTACATTGGCACACCCGGAAAGGGAATTCTGGCTGCTGATGAGTCCACTG GGACCATTGGAAAGCGTCTTGCCAGCATTAACGTTGAGAATGTCGAGGAGAACCGACGTGGTCTTCGTGAGCTCCTCTTCACCACCCCTGGTGCCCTCCA GTACCTCAGTGGAGTGATCCTCTTTGAGGAAACCCTTTACCAGAAGACCAAGTCAGGAAAGCCCTTCGTGGATCTGTTGAAGGAGAACGGTGTGCTCCCT GGTATCAAGGTCGACAAGGGTACTGTTGAACTTGCTGGAACCAACGGCGAGACCACCACTCAGGGTCTTGACGGACTCGGTGCTCGTTGTGCCAAGTACT ACGAGGCTGGTGCCAGGTTCGCCAAGTGGCGTGCCGTGTTGAAGATTGGCGCTAACGAGCCATCTCAGTTGGCCATCAACGAGAACGCCAATGGTCTCGC TAGGTATGCCATCATCTGCCAAGAGAACGGCCTAGTCCCAATTGTCGAGCCAGAGATCTTGGTCGATGGTCCTCACGACATTGAGAAGTGTGCCGATGTC ACCGAGCGCGTCCTTGCTGCTTGCTACAAGGCCCTCAACGACCACAAGGTCTTCCTTGAGGGAACTCTCTTGAAGCCCAACATGGTGACCCCTGGATCCG ACGCAAAAAAGGTATCCCCCGAGGTGATTGCTGAGTACACCGTCCGCGCCCTCCAGCGTACCATGCCACCTGCAGTCCCTGCCGTTGTGTTCTTGTCCGG TGGACAGAGTGAAGAGCAGGCTACCATCAACCTCAACGCCATGAACAAGCTCCAGGGGAAGAAGCCATGGAGTTTGTCCTTCTCGTTCGGACGTGCCCTT CAGCAGAGCACCCTCAAGGCATGGGCTGGAAAGGAGGAGAACATCGAGAAGGCTCAGAATGCTTTCCTCGCCAGAGCTAAGGCCAACTCTGAGGCCACAC TTGGCAAGTACCAGGGCGATGCCACCCTTGGTGAAGGCGCTTCCGAGAGCCTCCACGTCAAGGACTACAAGTACTGA
AA sequence Show only first row Show all	>Lus10023870 pacid=23160719 polypeptide=Lus10023870 locus=Lus10023870.g ID=Lus10023870.BGIv1.0 annot-version=v1.0 MSCYKGKYADELAANAAYIGTPGKGILAADESTGTIGKRLASINVENVEENRRGLRELLFTTPGALQYLSGVILFEETLYQKTKSGKPFVDLLKENGVLP GIKVDKGTVELAGTNGETTTQGLDGLGARCAKYYEAGARFAKWRAVLKIGANEPSQLAINENANGLARYAIICQENGLVPIVEPEILVDGPHDIEKCADV TERVLAACYKALNDHKVFLEGTLLKPNMVTPGSDAKKVSPEVIAEYTVRALQRTMPPAVPAVVFLSGGQSEEQATINLNAMNKLQGKKPWSLSFSFGRAL QQSTLKAWAGKEENIEKAQNAFLARAKANSEATLGKYQGDATLGEGASESLHVKDYKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36460			Aldolase superfamily protein (...		Lus10023870 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	1.0	0.9736
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	1.7	0.9671
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	2.4	0.9734
					Lus10023559 [exp]	2.8	0.9624
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004938 [exp]	3.2	0.9658
AT2G30050			transducin family protein / WD...		Lus10011429 [exp]	3.5	0.9664
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10040992 [exp]	4.2	0.9653
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	5.7	0.9558
AT1G72330		ALAAT2	alanine aminotransferase 2 (.1...		Lus10003935 [exp]	6.5	0.9634
AT2G14835			RING/U-box superfamily protein...		Lus10012365 [exp]	6.6	0.9326

Compare expression of checked genes

Lus10023870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.