Plant FIBer expression Database

Lus10023871 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35040 977 / 0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014374
[exp]
1162 / 0 AT2G35040 945 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Lus10013871
[exp]
1115 / 0 AT2G35040 989 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G114400
[exp]
984 / 0 AT2G35040 992 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Potri.008G128301
[exp]
89 / 1e-21 AT2G35040 84 / 2e-20 AICARFT/IMPCHase bienzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02142 MGS MGS-like domain
CL0109 CDA PF01808 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme
Representative CDS sequence
>Lus10023871 pacid=23160683 polypeptide=Lus10023871 locus=Lus10023871.g ID=Lus10023871.BGIv1.0 annot-version=v1.0
ATGCTTGGCTTGACTCGCGCTCCTCCTGCCGCCGCCACTACTTCTGTCCTTCTTCATCAAGGAAAGACCCTCGCCTCCATCATTTCATCCCCTCAATCGG
CTTCAGTTCGCTTCCTTCAAGTTCCTGCCACGTCACCGCCGCGCATTGTGCTGAAAGCCATGAGCGGGTCTCAAGCTGTTCCCGTGTCAAATAACGGCAC
TCAAGCTGTTTCTCCTCCTGGCGGAAAACAGGTTTTGATATCTTTATCGGACAAAAAAGACTTGGCTTTTCTTGGTAATGGCCTACAAAGTCTAGGGTAC
ACCATTGTATCAACAGGAGGTACAGCATCTGCTTTGGAAAATGCTGGGGTGGCTGTTACTAAAGTGGAGCAGCTGACCCATTTCCCTGAAATGCTTGATG
GACGTGTGAAAACATTACACCCTAATGTCCATGGTGGTATTCTTGCTAGAAGGGATCAAAAGCATCACATGGAAGATCTTAATTCCCATGGAATTGGCAC
TTTTGATATTGTAGTGGTAAACTTGTATCCCTTTTATGATAAAGTTACTGCAACTGGAGGAATCAAATTTGAGGATGGAATTGAGAACATCGATATTGGT
GGTCCGACTATGATACGAGCAGCCGCTAAGAATCATAAGGATGTCTTGGTTGTCGTCGACTCAGAAGATTATCCTGCTCTGCTAGAGTTTCTTAAAGGAA
ACCAAGATGATCAACAATTTCGTAGAAAGCTTGCGTGGAAGGCTTTTCAACATGTTGCTTCTTATGATTCAGCAGTTTCTGAGTGGCTCTGGAAGCAAAT
TGACAGAGAAAATAAAACGCCACCAAACTTCACAGTTCCCCTCTCACTTAAGAGCTCTCTCCGCTACGGTGAAAATCCACACCAGAAGGCGGCGTTTTAT
GTTGACAAGAGTATATCAGAGGTTAATGCTGGTGGTATTGCAACTGCTATCCAACACCATGGCAAGGTGATGGATTTTGCAGAGATCAATCGTAGTACAT
TCTTTGAGTGGTTCTTTTTTGCTACGCAGGAAATGTCGTACAATAATTATTTAGATGCGGATGCAGCTTGGAATTGTGTTTCAGAGTTTGAGAGCCCTAC
ATGTGTTATTGTGAAGCATACAAATCCTTGTGGAGTTGCTTCTCGTAGTGATATCCTGGAGGCATATAGGCTGGCTGTGAAGGCCGATCCAGTCAGTGCA
TTTGGTGGTATTGTTGCTTTCAATACAGAAGTTGACGAGGACCTTGCAAAGGAGCTCCGGGAGTTTAGGAGCCCTACCGATGGCGAAACGCGAATGTTCT
ATGAAATTGTGGTTGCTCCAAAGTATACGGAGAAGGGGCTCGAGATCCTCCGTGGGAAATCGAAGACATTGAGGATCCTGGAGGCGAGAAGGAACGAAAA
AGGAAAGCTTTCCTTAAGGCAAGTTGGTGGTGGGTGGTTGGCCCAAGAATCAGATGACTTGACCCCGCAAGATATCAACTTCAAGACTGTGGCCGAGAAG
CCCGTAGATGAAAGCGCGCTTAGGGATGCAAAGTTCGCATGGCTTTGTGTCAAACACGTGAAGAGTAATGCAATTGTAATAGCAAAGAATAACTGTATGC
TGGGTATGGGGAGCGGGCAGCCGAACCGCGTGGAAAGCTTGAGAATAGCGATGCGAAAGGCAGGAGACGATGTGAAAGGGGCTGCATTGGCTAGCGATGC
GTTTTTCCCATTTGCATGGAACGATGCGGTGGAAGAAGCGTGCCAGGCTGGGATCGGTGCGATTGCGGAACCGGGTGGTAGCATCAGAGATCAGGATGCC
ATAGATTGCTGCAACAAGTATGGCGTCTCCTTGTTGTTCACCAACGTCAGGCATTTTAGGCACTGA
AA sequence
>Lus10023871 pacid=23160683 polypeptide=Lus10023871 locus=Lus10023871.g ID=Lus10023871.BGIv1.0 annot-version=v1.0
MLGLTRAPPAAATTSVLLHQGKTLASIISSPQSASVRFLQVPATSPPRIVLKAMSGSQAVPVSNNGTQAVSPPGGKQVLISLSDKKDLAFLGNGLQSLGY
TIVSTGGTASALENAGVAVTKVEQLTHFPEMLDGRVKTLHPNVHGGILARRDQKHHMEDLNSHGIGTFDIVVVNLYPFYDKVTATGGIKFEDGIENIDIG
GPTMIRAAAKNHKDVLVVVDSEDYPALLEFLKGNQDDQQFRRKLAWKAFQHVASYDSAVSEWLWKQIDRENKTPPNFTVPLSLKSSLRYGENPHQKAAFY
VDKSISEVNAGGIATAIQHHGKVMDFAEINRSTFFEWFFFATQEMSYNNYLDADAAWNCVSEFESPTCVIVKHTNPCGVASRSDILEAYRLAVKADPVSA
FGGIVAFNTEVDEDLAKELREFRSPTDGETRMFYEIVVAPKYTEKGLEILRGKSKTLRILEARRNEKGKLSLRQVGGGWLAQESDDLTPQDINFKTVAEK
PVDESALRDAKFAWLCVKHVKSNAIVIAKNNCMLGMGSGQPNRVESLRIAMRKAGDDVKGAALASDAFFPFAWNDAVEEACQAGIGAIAEPGGSIRDQDA
IDCCNKYGVSLLFTNVRHFRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G35040 AICARFT/IMPCHase bienzyme fami... Lus10023871
[exp]
0 1
AT4G27490 3'-5'-exoribonuclease family p... Lus10041318
[exp]
2.8 0.9311
AT4G02930 GTP binding Elongation factor ... Lus10027995
[exp]
7.3 0.9426
AT3G20060 UBC19 ubiquitin-conjugating enzyme19... Lus10019034
[exp]
13.8 0.8874
AT4G00100 PFL2, ATRPS13A POINTED FIRST LEAF 2, ribosoma... Lus10027192
[exp]
14.1 0.9293
AT1G66250 O-Glycosyl hydrolases family 1... Lus10004044
[exp]
15.6 0.9163
AT5G66860 Ribosomal protein L25/Gln-tRNA... Lus10009338
[exp]
15.8 0.9301
AT3G66652 fip1 motif-containing protein ... Lus10016905
[exp]
17.1 0.9277
AT5G52470 ATFIB1, ATFBR1,... SKP1/ASK1-INTERACTING PROTEIN,... Lus10039260
[exp]
20.5 0.9285
AT1G68990 MGP3 male gametophyte defective 3 (... Lus10019208
[exp]
20.6 0.9214
AT4G21130 EMB2271 EMBRYO DEFECTIVE 2271, Transdu... Lus10023255
[exp]
22.4 0.9218

Lus10023871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.