Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03680 200 / 2e-58 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 159 / 8e-44 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT1G76880 119 / 4e-29 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G33240 117 / 2e-28 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76890 115 / 6e-28 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G28300 72 / 1e-13 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 68 / 2e-12 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014375 [exp] 438 / 7e-152 AT5G03680 296 / 1e-93 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 272 / 5e-87 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10027718 [exp] 268 / 5e-86 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 123 / 2e-30 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10029778 [exp] 120 / 3e-29 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 119 / 4e-29 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 114 / 2e-27 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10020873 [exp] 113 / 2e-27 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10028582 [exp] 97 / 3e-22 AT1G76880 219 / 2e-66 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G235000 [exp] 218 / 2e-65 AT5G03680 338 / 5e-109 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.008G025600 [exp] 216 / 2e-64 AT5G03680 353 / 6e-115 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Potri.011G147400 [exp] 135 / 1e-34 AT1G33240 181 / 5e-48 GT2-LIKE 1, GT-2-like 1 (.1) Potri.001G454500 [exp] 133 / 1e-33 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.005G191900 [exp] 124 / 8e-32 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.002G068600 [exp] 122 / 4e-30 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 121 / 6e-30 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 119 / 5e-29 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 116 / 3e-28 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.019G010200 [exp] 114 / 9e-28 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023872 pacid=23160750 polypeptide=Lus10023872 locus=Lus10023872.g ID=Lus10023872.BGIv1.0 annot-version=v1.0 ATGGCCGTGATGCAGTTCATGCCACCTCAGCAGCCAACAGTAGCCGATTCCACTACTGCTGCTGCTGCTACTACTTCTTCCCTCGCCGGAGAAGAGTTGT TCGGCGGCGGAAGCGGAACTGGGAGATGGCCGAGACAAGAGACGCATACCCTTCTGGACATCAGATCCAGGCTTGACCCTCAGTTCAAAGACGCCAACCA CAAAGGCCCTCTCTGGGACCAAGTCTCCAGGATAATGTCGGAGGAGTATGGATACCAAAGGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATTTGTAC AAGTACTACAAGAAGACTAAAGAAGGGAAAGCTGGCAGACAAGATGGTAAGCATTATAGATACTTTAGGCAACTTGAAGCTCTCTATGGTACTAGTACTA CCACCACCACTAACCTAATACCTCATGATCATTCACTATTGCAACAAAACCAAGATTCTTCTTCCCATTTCATTGGAAACATGGGAACTACTAGTACTAG CTTCCACCACCATCAATATTTACCGAGTACCACTTCAAACCAAGATATGTTCTACTCGAGCCTCAGTCTGTCGGCCAATAACAACTCCTCCTCCGAGGAA TTCGAGTCCTCTTCCTCCGAGGACCGTGATGTGAGCGTGAATCATGATGATTCGAGTGTTAGGAGGAGGAGGAGGAGGAAGAGCGTGATAAAGGAGTTCA TCGACTCGCATATGAGGAAGTTGTTCGAGAGGCAGGAGTCGTGGTTCGAGAAGCTGACCAAGACGTTGGAGAGGAAAGAGGAGGAGAGGGCGGTTAGAGA GGAAGAGTGGAGGAAGGAAGAGTGTGTGAGGATTGAGAGAGAGCACAAGTTTTGGGCAAAGGAAAGAGCTTGGATTAAAGCTAGGGACAACTCATTGATG GAAGCTCTAGGGAAGTTGGGTAGTAGTAGTAATCATGTGAATAAGGCTTATTCCTCTTCAGATGTCGGTAACTATGGGTTCCTTGGCGGGGAAGCAATGT ACAATCCTCAACCGTTGCGGAATCTTCACAGGGATCATCACAGTGATCATCATCATGGATCGTCATCGTCGTCGTTGCCACTTGGAGAATCAAGGTTCTT TATTGGGGAAGGAGGGGGAAATCTGTGGGAGAATTATGGGTTGAAGCTTAGTAAAGGAGACCATGATGATGATGGTGATGATCAAAATCAGTAG
AA sequence Show only first row Show all	>Lus10023872 pacid=23160750 polypeptide=Lus10023872 locus=Lus10023872.g ID=Lus10023872.BGIv1.0 annot-version=v1.0 MAVMQFMPPQQPTVADSTTAAAATTSSLAGEELFGGGSGTGRWPRQETHTLLDIRSRLDPQFKDANHKGPLWDQVSRIMSEEYGYQRSGKKCREKFENLY KYYKKTKEGKAGRQDGKHYRYFRQLEALYGTSTTTTTNLIPHDHSLLQQNQDSSSHFIGNMGTTSTSFHHHQYLPSTTSNQDMFYSSLSLSANNNSSSEE FESSSSEDRDVSVNHDDSSVRRRRRRKSVIKEFIDSHMRKLFERQESWFEKLTKTLERKEEERAVREEEWRKEECVRIEREHKFWAKERAWIKARDNSLM EALGKLGSSSNHVNKAYSSSDVGNYGFLGGEAMYNPQPLRNLHRDHHSDHHHGSSSSSLPLGESRFFIGEGGGNLWENYGLKLSKGDHDDDGDDQNQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10023872 [exp]	0	1
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	10.2	0.8492
AT1G23220			Dynein light chain type 1 fami...		Lus10031734 [exp]	23.3	0.8141
					Lus10012330 [exp]	46.0	0.8199
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	127.6	0.8235
AT3G51100			unknown protein		Lus10028362 [exp]	137.2	0.8257
AT5G65880			unknown protein		Lus10011719 [exp]	143.4	0.8117
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	158.7	0.8175
AT3G25940			TFIIB zinc-binding protein (.1...		Lus10015458 [exp]	166.2	0.8182
					Lus10005797 [exp]	223.7	0.7995

Compare expression of checked genes

Lus10023872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.