Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014377 [exp] 158 / 2e-49 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G013700 [exp] 60 / 2e-11 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023874 pacid=23160760 polypeptide=Lus10023874 locus=Lus10023874.g ID=Lus10023874.BGIv1.0 annot-version=v1.0 ATGACATCAACAACTGGATTTCCACAGCCAAAAAGACCAGACAACAGCTATTCCCCACGGTTACCAACTGAAACACCGTACCCAGCTCCCCAATATCTTC CACCACCTGCAACCTCTTCCCCTGCTGTCACGGCTTACCCTGTTCCTTCACATCTCCTCGTGCCCCCACCGGTCGGCTTTCCGGTTCAGTTAATAAACAT TAATCGAGATGGGTATTCGGATGATGACTCGATTTCTACGGAGGAAGAGAGGGAATCGATCGAGGAGCTGAAACGTGGGATATTGGAGCTGTACGAGAAG CTGCCCGCGAGCATAAGGAGCAGGATTAACTTGGACAAGTTTCATATCCCTAACGATATTGTGACGGGGTTGAAGGTTGATGATGCTCGGAGCAGGGAAG TGCGAGGGATCGTTGACCAGTTGTCGCCTAAGCTCGAGCGCTTTAAGGTTAGGACCGTACGAGGTGGAGGTGGAGGAGTTGTGACTGTGGATGATGATGA TGAAGCTGGTGACAAAACTAGACATGGAACCCAGTTTTTTTAA
AA sequence Show only first row Show all	>Lus10023874 pacid=23160760 polypeptide=Lus10023874 locus=Lus10023874.g ID=Lus10023874.BGIv1.0 annot-version=v1.0 MTSTTGFPQPKRPDNSYSPRLPTETPYPAPQYLPPPATSSPAVTAYPVPSHLLVPPPVGFPVQLININRDGYSDDDSISTEEERESIEELKRGILELYEK LPASIRSRINLDKFHIPNDIVTGLKVDDARSREVRGIVDQLSPKLERFKVRTVRGGGGGVVTVDDDDEAGDKTRHGTQFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10023874 [exp]	0	1
AT2G41480			Peroxidase superfamily protein...		Lus10020421 [exp]	1.7	0.8995
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	2.2	0.9065
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10002936 [exp]	4.9	0.8857
AT5G03380			Heavy metal transport/detoxifi...		Lus10021516 [exp]	5.7	0.8904
AT4G21510			F-box family protein (.1)		Lus10011255 [exp]	6.5	0.8861
AT2G40600			appr-1-p processing enzyme fam...		Lus10034225 [exp]	7.3	0.8845
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Lus10018142 [exp]	8.7	0.9048
AT2G18680			unknown protein		Lus10015508 [exp]	10.5	0.8322
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Lus10009386 [exp]	11.5	0.8812
AT1G16670			Protein kinase superfamily pro...		Lus10026207 [exp]	11.6	0.8876

Compare expression of checked genes

Lus10023874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.