Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03670 190 / 9e-54 unknown protein AT2G36420 86 / 1e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014378 [exp] 629 / 0 AT5G03670 246 / 3e-75 unknown protein Lus10035565 [exp] 231 / 2e-69 AT5G03670 226 / 9e-68 unknown protein Lus10027723 [exp] 195 / 6e-56 AT5G03670 236 / 2e-71 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115300 [exp] 213 / 3e-62 AT5G03670 199 / 4e-57 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023875 pacid=23160703 polypeptide=Lus10023875 locus=Lus10023875.g ID=Lus10023875.BGIv1.0 annot-version=v1.0 ATGGCTACTCATCATCATCATCATCATCATCATCATCAACAAAAGCACTTATACGAACTGTTGAAAGATGACCAGGAGCCGTTCGTCCTCAACAACTACA TCGCCGACGTCCACCGCCGCTGCCAGCTCACACGAACCCAACCCAAACCTGCCAAATCAAACTTGGCCCGAAACGCTTGCTTCCTCTCCTTATCCAATTC CCCTGACCCGCGAAAATCGCCTCTCTACTTCCCAAAATCTCCCGTCGGGAAAGCTGCAAGCTCCGGCGGCTCGTTCGGCCGTGTCCCGTCCAAAACGGCG TCGCTTCTCCTGGAAGCTGCAATAAGGGTCTCCCACAAAACGCAGGGAGGAGGAGGAGGGAATAATAAGAAGAAGAAGAAGAGCAGCAGCAGCGGAGGAA AAATTGGCTCCGGAATTTTCGGATCTCTGCTCAAGCGTCTGGGGAATAGTAAGAAGCCCAAGAAAGAAGAAGTTGCCTGCGTTGATGTTAAGGTCTCCGT GAAAGATATTTTGCGGCGGGATTTGAACAGAGGGGGGTCGGGATGGAATAACGGGAGGGCGAAATCTGATTCTTCGCCGTTGAGGAGAAACGCAGTGAGC AGTGGCGGTCGCGAGAGTGAGCCGAGTAGCGCGGTCTGGTCGTCGGAGAGTAACGAGTCCATCGATTTGGATTTGGAGTGCCGTTCGTCGAGCAGCGGCG GCGCCGGCTTATCGGATGAGGAGCTTGAGTACGTTACTGACGTCGTCTACCGCGACGATACGCAGTATTTCTGCGAGAGCCCTTTCCATTTCGTGCTTGA AAGAAGCAATTCTTCCTCATCCGCCAGTCGTCGGACTCCGGAGTTCTCATCGCCGGCTGCTTCTCCTATCAGTCTGAAAACAGAGGGGAATGAGAATAAC AACGATGTGGAAAGCTTGAAGAAGTGCCAAGTAGTACAGAATGAAGGAGAGGGTGAAGAGGAAGAAGAGAAGGAGCAGTGCAGCCCTGTTTCAGTACTGG ACCCACCATTTGAGGAAGAGGACGACGACGACTGTGATGAAGAAGAAGATGATCATGATGATGAGGACGAGAGGGAGGACGAAGACGGCGAGGGTTTTGA TATGGAGTGTAGCTTTGCCTTTGTACAGAAGGCAAAGCAAGAGCTATTCGAAAAGCTGTATAGATTTGAGAAGCTAGCAGAGCTCGATCCTGTTGAGCTC GAGAAACGAATGCTCGAGTATGATGACGAGGAATACGATAGTAATGATGTTGATGATGAAGGAGCCAGTGAGTGTGGGACTGCAGATGGGAACAACAAGT GCACTAACCAATTGGTAATGGACGAACTTCGCAAGTCGAGCATTCAAATCCCTGCAGGAGACGTGAAGAGACTGGTCTCTGACCTCATCGACGAGGAAGA AAAACAAGGGACAGGAGCGACGAAAAGGGTGTGCAAGCGGTTTGAAGCATGGAATGAAGTGGAATCCAACACCATTGAGATGATGGTGGAGCATGACTTC AACAGCTCACACAGTGAATGGAGAAACAAGGGGGGCCAAGTTTCTGATATAGCAATGGAGATTGAACTTGCTATCTTTGACTTGCTGGCTGAAGAACTTA TGTGA
AA sequence Show only first row Show all	>Lus10023875 pacid=23160703 polypeptide=Lus10023875 locus=Lus10023875.g ID=Lus10023875.BGIv1.0 annot-version=v1.0 MATHHHHHHHHHQQKHLYELLKDDQEPFVLNNYIADVHRRCQLTRTQPKPAKSNLARNACFLSLSNSPDPRKSPLYFPKSPVGKAASSGGSFGRVPSKTA SLLLEAAIRVSHKTQGGGGGNNKKKKKSSSSGGKIGSGIFGSLLKRLGNSKKPKKEEVACVDVKVSVKDILRRDLNRGGSGWNNGRAKSDSSPLRRNAVS SGGRESEPSSAVWSSESNESIDLDLECRSSSSGGAGLSDEELEYVTDVVYRDDTQYFCESPFHFVLERSNSSSSASRRTPEFSSPAASPISLKTEGNENN NDVESLKKCQVVQNEGEGEEEEEKEQCSPVSVLDPPFEEEDDDDCDEEEDDHDDEDEREDEDGEGFDMECSFAFVQKAKQELFEKLYRFEKLAELDPVEL EKRMLEYDDEEYDSNDVDDEGASECGTADGNNKCTNQLVMDELRKSSIQIPAGDVKRLVSDLIDEEEKQGTGATKRVCKRFEAWNEVESNTIEMMVEHDF NSSHSEWRNKGGQVSDIAMEIELAIFDLLAEELM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03670			unknown protein		Lus10023875 [exp]	0	1
AT3G02120			hydroxyproline-rich glycoprote...		Lus10032981 [exp]	8.4	0.7726
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Lus10037735 [exp]	10.2	0.8281
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Lus10022459 [exp]	11.5	0.8129
AT5G64550			loricrin-related (.1)		Lus10019307 [exp]	11.8	0.7740
AT5G18610			Protein kinase superfamily pro...		Lus10023473 [exp]	12.6	0.7945
AT5G03670			unknown protein		Lus10014378 [exp]	16.4	0.7289
AT2G18050		HIS1-3	histone H1-3 (.1.2)		Lus10025968 [exp]	18.0	0.7739
AT2G34585			unknown protein		Lus10023307 [exp]	19.4	0.7522
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	32.0	0.7740
AT5G56520			unknown protein		Lus10020285 [exp]	32.9	0.7877

Compare expression of checked genes

Lus10023875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.