Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36410 220 / 3e-74 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 219 / 8e-74 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 208 / 1e-69 Family of unknown function (DUF662) (.1) AT5G03660 184 / 2e-60 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G27740 174 / 3e-56 Family of unknown function (DUF662) (.1) AT3G52900 149 / 1e-46 Family of unknown function (DUF662) (.1) AT2G36355 132 / 6e-40 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027724 [exp] 229 / 8e-78 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 228 / 3e-77 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10014379 [exp] 228 / 3e-77 AT2G36410 214 / 4e-71 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10019529 [exp] 190 / 2e-62 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 187 / 2e-61 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10034160 [exp] 139 / 2e-42 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 137 / 5e-41 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115400 [exp] 231 / 6e-79 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 178 / 8e-58 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 172 / 1e-55 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 168 / 3e-54 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10023876 pacid=23160686 polypeptide=Lus10023876 locus=Lus10023876.g ID=Lus10023876.BGIv1.0 annot-version=v1.0 ATGATTCAGAACTCTGGTGGAAGCTTGAGCTTCAGCAGCCAAATGTCCAAGGAAGATGAGGAGATGTCCAGGTCTGCTCTCTCAACTTTCAGGGCTAAAG AGGAAGAGATTGAGAGGAGGAAGATGGAAGTTAGGGAGAGGGTTCAAGCTCAGCTTGGCCGTGTTGAGGAAGAGACTAAGCGTTTAGCCATGATTCGTGA GGAACTGGAAGGATTGGCAGATCCCATGAGGAAAGAAGTATCCTCAGTGAGGAAGAAGATTGATTCAGTGAACAAGGAATTGAAGCCTCTAGGACACAGT GTTCAGAAGAAGGAGAAAGAGTACAAGGATGCCCTTGAGGCTTTTAATGACAAGAACAAGGAGAGAGTACAGCTCATAACCAAGCTAATGGAGTTTGAAC AGCTGGTGAGCGAAAGCGAGAGGGCGAGGATGAAGAAGCTCGAGGAGCTGAGTAAGAGCATAGATTCGACACGCTAA
AA sequence Show only first row Show all	>Lus10023876 pacid=23160686 polypeptide=Lus10023876 locus=Lus10023876.g ID=Lus10023876.BGIv1.0 annot-version=v1.0 MIQNSGGSLSFSSQMSKEDEEMSRSALSTFRAKEEEIERRKMEVRERVQAQLGRVEEETKRLAMIREELEGLADPMRKEVSSVRKKIDSVNKELKPLGHS VQKKEKEYKDALEAFNDKNKERVQLITKLMEFEQLVSESERARMKKLEELSKSIDSTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	0	1
AT3G27100			unknown protein		Lus10012534 [exp]	1.4	0.8756
AT4G01790			Ribosomal protein L7Ae/L30e/S1...		Lus10007191 [exp]	1.7	0.8777
AT1G51730			Ubiquitin-conjugating enzyme f...		Lus10006873 [exp]	3.5	0.8605
AT4G27120			unknown protein		Lus10043066 [exp]	3.7	0.8472
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	3.9	0.8617
AT2G33735			Chaperone DnaJ-domain superfam...		Lus10040535 [exp]	4.4	0.8154
AT2G41530		ATSFGH	ARABIDOPSIS THALIANA S-FORMYLG...		Lus10035437 [exp]	6.7	0.8395
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Lus10034358 [exp]	6.9	0.8225
AT5G19930			Protein of unknown function DU...		Lus10017753 [exp]	7.5	0.8402
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	8.1	0.8141

Compare expression of checked genes

Lus10023876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.