Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36400 81 / 7e-17 GRF ATGRF3 growth-regulating factor 3 (.1) AT3G52910 73 / 2e-14 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014381 [exp] 206 / 6e-67 AT2G36400 97 / 2e-24 growth-regulating factor 3 (.1) Lus10014380 [exp] 165 / 2e-49 AT2G36400 181 / 5e-55 growth-regulating factor 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115200 [exp] 91 / 1e-20 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1) Potri.013G077500 [exp] 42 / 0.0004 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08880 [flax] [poplar] QLQ QLQ
Representative CDS sequence Show only first row Show all	>Lus10023877 pacid=23160831 polypeptide=Lus10023877 locus=Lus10023877.g ID=Lus10023877.BGIv1.0 annot-version=v1.0 ATGGACTTCCATCTGAAGCAATGGCGAAACCAACATGAGTCAGAAGTCGAAGAAGAACAGCAACAGCAGCACAATAATCCATCTGGGAAGATTCCAAAAA TGCTCTTACATCCTTCTGCTGATGATGACAACCTTCAAAACCCATCTCCTGCTGATGCTGCTGCCCTCCCTTTGTTTGCTGATTCATCCACCACTAGATT TCCCACCACCAGGATGGGAAGTTACTTCAGTTTGGCACAATGGCAGGAGCTGGAGCTTCAAGCTTTGATCTACAGATACATGTTGGCTGGAGCTTCTGTC CCTCCTCAACTCCTTCATCCCATCAAGAAAAGCCTCCTCCTTCACACTTCTTCTTCTTCACCACCTTCCTATTTCCTCCATAATTACCCCTATCCACCTT CTTCCTTAATGCAGGCAGGGTACTGGGGAAGGGCAGCCATGGATCCCCCTCGCTCTGCAGGGCAAGGAGCTGCAGCTTCCATTGATCTGTTTCACAATAA TCGAAGAACTGAGACTTGCCTTCAAAGTGAAGGTACAGACAACAGATCGGATGGCCATGTCTTGAGGCATTTCTTCGACGACTGGCCACGCGACTCTGAC GACGGCGCCGGAACCAATTTGAATTCGATGAACTCTACAACCTACCTGTCTATATCCACTCCGGCGGCGTCGGATGTATCGTTGAAGCTCGCAACGGGGA ACGACGGCGGGGAGGAGGAAGGCGGTGGTGGGTCTAGAGGAGGAGGTTCGGATAGGGACCAGGCCCAGATGAACTGGGCCGCTGGTTGGGCTGCGAATCA GGTTGCTTCAATAGGTGGGCCGCTTGCTGAGGCGTTGAGATCTTCTTCGGCTTCAAATCCTTTTCCCGCCAGCGTCCTGCACCAGGTGCCACGTGGCGGC ACTGCTGCTGAAACCAACTACGTTAGCGCTTGA
AA sequence Show only first row Show all	>Lus10023877 pacid=23160831 polypeptide=Lus10023877 locus=Lus10023877.g ID=Lus10023877.BGIv1.0 annot-version=v1.0 MDFHLKQWRNQHESEVEEEQQQQHNNPSGKIPKMLLHPSADDDNLQNPSPADAAALPLFADSSTTRFPTTRMGSYFSLAQWQELELQALIYRYMLAGASV PPQLLHPIKKSLLLHTSSSSPPSYFLHNYPYPPSSLMQAGYWGRAAMDPPRSAGQGAAASIDLFHNNRRTETCLQSEGTDNRSDGHVLRHFFDDWPRDSD DGAGTNLNSMNSTTYLSISTPAASDVSLKLATGNDGGEEEGGGGSRGGGSDRDQAQMNWAAGWAANQVASIGGPLAEALRSSSASNPFPASVLHQVPRGG TAAETNYVSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	0	1
AT5G03670			unknown protein		Lus10035565 [exp]	1.0	0.9551
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10039304 [exp]	1.4	0.9509
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10008269 [exp]	1.7	0.9448
AT5G52860		ABCG8	ATP-binding cassette G8, ABC-2...		Lus10027545 [exp]	2.8	0.9367
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	4.2	0.9159
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Lus10015902 [exp]	5.0	0.9407
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10030269 [exp]	5.7	0.9231
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	6.5	0.9390
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	7.2	0.9424
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	7.5	0.9271

Compare expression of checked genes

Lus10023877 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.