Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36390 1258 / 0 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 1256 / 0 SBE2.2 starch branching enzyme 2.2 (.1) AT1G66950 615 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 610 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 553 / 6e-175 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT3G16340 535 / 1e-168 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 525 / 2e-164 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 523 / 2e-163 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 509 / 1e-158 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 480 / 6e-148 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014382 [exp] 1566 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 1338 / 0 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10016012 [exp] 799 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 798 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10008984 [exp] 572 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041684 [exp] 558 / 0 AT1G15520 899 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 565 / 2e-179 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 565 / 3e-179 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 562 / 5e-179 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115100 [exp] 1336 / 0 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 833 / 0 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.006G115000 [exp] 657 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.008G024400 [exp] 641 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.009G147100 [exp] 607 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.001G048700 [exp] 570 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G049000 [exp] 562 / 2e-180 AT1G15520 1847 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 565 / 1e-179 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 563 / 1e-178 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 557 / 2e-176 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10023878 pacid=23160723 polypeptide=Lus10023878 locus=Lus10023878.g ID=Lus10023878.BGIv1.0 annot-version=v1.0 ATGGACTTGGTTGAGTTGAATCCACTAAGAGATGCCTTAGTTGGACTTCCAGGAGTAGATGGTCTTTCTACAGAGCAAAGGAAGAGATTGACAATAGCTG TGGAATTGGTTGCTAATCCTTCTATCATATTTATGGACGAACCAACATCTGGCCTCGATGCTAGAGCAGCCGCCATTGTTATGCGCACGGTAAGGAACAC AGTAGACACAGGGAGAACTGTTGTGTGTACAATTCACCAGCCGAGTATAGACATTTTTGAAGCTTTTGATGAGCTACTATTGATGAAAAGAGGAGGTCAA GTAATTTATGCTGGACCTCTTGGTCGCCAGTCTCATAAGCTCGTTGAGTATTTCGAGGCTGTCCTGGGAGTTCCTAAGATCAAAGATGGATACAACCCAG CAACATGGATGCTTGAAGTCAGTTCACCTGCAATGGAAGTTCAGCTAGATGTGGACTTCGCGCAAATTTACGCAAATTCTACTCTTTATCACCAGAATCA AGAACTGATTAAAGAACTTAGCACAGCGGAACCGGGTTCAAAGGATCTCTACTTCCCAACACAATACTCCCAGTCTTTCACCACTCAGTATAGGGCTTGT TTCTGGAAACAAAACTGGTCTTATTGGAGAAACACTCAGTACAACGCGGTTCGCTTCTTCTTGACATTTGTAATAGGAGTTCTTTTCGGCATCATCTTCT GGAAGAAAGGACAGAAAACAGGGAAACAGCAGGACTTGATGAACATTCTGGGAGCAATATATGCTGCAGTGTTTTTCCTGGGAGCAACAAATGCTTCTTC TGTGCAGCCAGTTGTTTCGGTCGAAAGAACAGTTTTTTATCGTGAAAGAGCGGCTGGAATGTACTCTGCATTGCCTTACGCATTCGCCCAGGTGTCCATA GAAGCAATCTACGTTGCATTCCAAACGTTAATTTACCACCTTCTTCTCTACTCCATGATTGGCTTCGAATGGAAAGTCGACAAATTCTTGCTATTCTACT ACTACATCTACATGGCGTTTGTCTACTTCACACTCTACGGCATGATGGTTGTGGCACTCACCCCTGGCCACCAAATCGCTGCCATTTGCATGTCCTTCTT CTTATCCTTCTGGAACTTGTTCGCCGGCTTCCTCATTCCCCGAATTGCCCTTTACAAGATACCAGAAAGTTCTACGATGGTTGATGGCAAGAATAATAGG ATCCTGGGGAAACAAGGGGAAAATGCTGTTTTGCCGGATAGAAGATTTACGATTGGGGAAAGAAGCATCCCTCCACCGGGTGCTGGTCAGAGGATATATG ACATTGATCCAACATTGTCAGGTTTTCGCCAGCATCTTGATTACAGATATTCGCAGTACAAAAGAATTCGTGCAGAAATTGATAAGTTTGAAGGTGGTTT GGAGGAGTTTTCACGTGGATATGAAAAGTTTGGATTTATACGCAGTGAAACAGGGATAACATATAGAGAGTGGGCGCCTGGAGCAACAAGGGCAGCATTG ATAGGAGATTTTAACAACTGGAATCCCAATGCAGATGTCATGACTAGGAATGAGTTTGGCGTCTGGGAGATCTTTTTGCCCAACAATGCTGATGGTTCAT CGCCAATTCCCCATGGTTCACGGGTAAAGATACGCATGGACACTCCATCTGGCTTGAAAGATTCTATCCCTGCTTGGATTAAGTTTGCTGTACAAGCTCC AGGTGAAATCCCGTATAATGGAATCTACTATGACCCACCAAAAGAGGAGAAGTATGTTTTTAAGCATCCTCAACCAGATAAACCAAAATCACTGAGGATT TACGAGTCACATGTTGGCATGAGCAGTACGGAACCAAAAATCAATACATATGCTAGCTTTAGAGATGATGTATTGCCGCGCATCAAGAAGCTTGGCTATA ATGCTGTCCAGATCATGGCTATTCAGGAACACTCATATTATGCCAGCTTTGGCTACCATGTCACAAACTTTTTTGCACCTAGCAGTCGTTTTGGGACACC TGATGATTTGAAGTCTCTGATAGATAAAGCTCACGAGCTAGGTCTAGTTGTTCTCATGGATATTGTTCACAGCCATTCATCGAATAATACATTGGATGGG TTGAACATGTTTGATGGGACTGATTCCCAGTACTTTCACTCTGGAGCGCGGGGTCATCATATGATGTGGGACTCTCGCCTTTTCAACTACGGAAGCTGGG AGGTTGTAAGATACCTTCTTTCAAACGCAAGATGGTGGCTGGACGAGTATAAATTTGATGGGTTCAGATTTGATGGTGTTACTTCAATGATGTACACTCA TCATGGATTGCAGATGACCTTTACAGGAAACTACAACGAATACTTTGGATTCGCAACTGATGTAGATGCTGTCGTTTATCTGATGCTTGTTAATGACCTG ATTCATGGTCTTTTCCCTGAAGCTATAACCATTGGCGAAGATGTTAGCGGAATGCCTACGTTTTGCATTCCTGTCCAAGATGGTGGAGTGGGATTTGATT ACCGTCTTCACATGGCCATTGCTGATAAATGGATTGAGCTTCTAAAGAAAAGAGATGAAGACTGGAGAATGGGTGACATTGTTCACACGTTGACTAACAG AAGGTGGTTGGAGAAGTGTGTATGCTACGCGGAGAGTCATGATCAAGCTCTTGTCGGCGACAAGACTATTGCCTTCTGGTTGATGGACAAGGATATGTAC GACTTCATGGCTCTCGACAGGCCAGCCACTCCTCTTATTGATCGTGGTATAGCATTACACAAAATGATCAGGCTTATCACTCTGGGACTAGGTGGTGAAG GATATTTGAACTTCATGGGAAATGAATTCGGGCATCCTGAGTGGATCGATTTTCCGAGAGGCGATCAGCATCTTCCTAATGGTAAAGTTGTTCCGGGGAA CAATAACAGTTTTGATAAATGCCGACGTAGATTTGATCTTGGCGATGCAGAATATCTAAGGTACCATGGTCTGCAAGAATTCGATCAGGCAATGCACCAC CTCGAAGGAACCTATGGCTTCATGACTGATATTCACCAGTACATATCTCGAAAAGACGAAGGGGATCGGGTGATTGTTTTCGAGAGAGGAAACCTTGTGT TCGTCTTCAACTTCCACTGGAATCAAAGCTATTCAGATTACAGAGTTGGGTGCTACAAGTCAGGAAAATACAAGATTGTTCTGGACTCCGACGATGCTCT CTTTGGTGGTTTCAACAGAATCGATCACAATGCTGAATTCTTCACCTTTGATGATTGGTATGATGACCGTCCTCGGTCCTTCATGGTGTATGCCCCAGCA AGAACAGCAGTCGTCTATGCATTGGTAGAGGATACAACAGGAAAAGCTCCAGTGAAGACTGAGTCTACTGTTGCTTTAGTGAACGACAACCTCAAACCTC TCCCCGCCTCAGAAACCACGCACAGCTAA
AA sequence Show only first row Show all	>Lus10023878 pacid=23160723 polypeptide=Lus10023878 locus=Lus10023878.g ID=Lus10023878.BGIv1.0 annot-version=v1.0 MDLVELNPLRDALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ VIYAGPLGRQSHKLVEYFEAVLGVPKIKDGYNPATWMLEVSSPAMEVQLDVDFAQIYANSTLYHQNQELIKELSTAEPGSKDLYFPTQYSQSFTTQYRAC FWKQNWSYWRNTQYNAVRFFLTFVIGVLFGIIFWKKGQKTGKQQDLMNILGAIYAAVFFLGATNASSVQPVVSVERTVFYRERAAGMYSALPYAFAQVSI EAIYVAFQTLIYHLLLYSMIGFEWKVDKFLLFYYYIYMAFVYFTLYGMMVVALTPGHQIAAICMSFFLSFWNLFAGFLIPRIALYKIPESSTMVDGKNNR ILGKQGENAVLPDRRFTIGERSIPPPGAGQRIYDIDPTLSGFRQHLDYRYSQYKRIRAEIDKFEGGLEEFSRGYEKFGFIRSETGITYREWAPGATRAAL IGDFNNWNPNADVMTRNEFGVWEIFLPNNADGSSPIPHGSRVKIRMDTPSGLKDSIPAWIKFAVQAPGEIPYNGIYYDPPKEEKYVFKHPQPDKPKSLRI YESHVGMSSTEPKINTYASFRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDDLKSLIDKAHELGLVVLMDIVHSHSSNNTLDG LNMFDGTDSQYFHSGARGHHMMWDSRLFNYGSWEVVRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQMTFTGNYNEYFGFATDVDAVVYLMLVNDL IHGLFPEAITIGEDVSGMPTFCIPVQDGGVGFDYRLHMAIADKWIELLKKRDEDWRMGDIVHTLTNRRWLEKCVCYAESHDQALVGDKTIAFWLMDKDMY DFMALDRPATPLIDRGIALHKMIRLITLGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKVVPGNNNSFDKCRRRFDLGDAEYLRYHGLQEFDQAMHH LEGTYGFMTDIHQYISRKDEGDRVIVFERGNLVFVFNFHWNQSYSDYRVGCYKSGKYKIVLDSDDALFGGFNRIDHNAEFFTFDDWYDDRPRSFMVYAPA RTAVVYALVEDTTGKAPVKTESTVALVNDNLKPLPASETTHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10023878 [exp]	0	1
AT5G19010		ATMPK16	mitogen-activated protein kina...		Lus10021945 [exp]	6.1	0.7228
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	7.7	0.7117
AT4G04320			malonyl-CoA decarboxylase fami...		Lus10020031 [exp]	19.3	0.6902
					Lus10008674 [exp]	25.3	0.7067
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10009501 [exp]	25.7	0.6700
AT2G35736			unknown protein		Lus10000732 [exp]	25.9	0.6771
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10021652 [exp]	26.0	0.6566
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10016830 [exp]	29.9	0.7010
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10042507 [exp]	30.2	0.6160
AT4G15840			BTB/POZ domain-containing prot...		Lus10002874 [exp]	32.6	0.6733

Compare expression of checked genes

Lus10023878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.