Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21110 271 / 2e-95 G10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014385 [exp] 298 / 7e-106 AT4G21110 271 / 2e-95 G10 family protein (.1) Lus10035562 [exp] 289 / 3e-102 AT4G21110 273 / 5e-96 G10 family protein (.1) Lus10027728 [exp] 293 / 1e-96 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147000 [exp] 270 / 7e-95 AT4G21110 244 / 1e-84 G10 family protein (.1) Potri.004G186600 [exp] 266 / 4e-93 AT4G21110 239 / 1e-82 G10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01125 [flax] [poplar] G10 G10 protein
Representative CDS sequence Show only first row Show all	>Lus10023881 pacid=23160825 polypeptide=Lus10023881 locus=Lus10023881.g ID=Lus10023881.BGIv1.0 annot-version=v1.0 ATGCCAAAGGTGAAGACGAATCGCGTCAAGTACCCGGAGGGCTGGGAGTTAATCGAGCCGACCCTTCGTGAACTGCAGGCGAAGATGAGAGAAGCTGAGA ATGAGTCACATGATGGTAAGAGGAAATGTGAGGCACTGTGGCCAATTTTCAAGATAGCACATCAGAAGAGCCGTTATATTTTCGACCTTTACCATCGGAG GAAGGAAATATCCAAGGAATTGTATGAGTTCTCCATGGATCAAGGTTACGCAGACCGTAATCTCATTGCCAAATGGAAGAAGCCTGGGTACGAGCGATTA TGCTGCTTGAGATGCATCCAACCAAGGGACCATAACTTTGCCACGACCTGTGTTTGTCGAGTGCCGAAGAACATCAGAGAGGAAGAGGTGATAGAATGCG TGCATTGCGGGTGTAAAGGCTGTGCAAGTGGAGATTGA
AA sequence Show only first row Show all	>Lus10023881 pacid=23160825 polypeptide=Lus10023881 locus=Lus10023881.g ID=Lus10023881.BGIv1.0 annot-version=v1.0 MPKVKTNRVKYPEGWELIEPTLRELQAKMREAENESHDGKRKCEALWPIFKIAHQKSRYIFDLYHRRKEISKELYEFSMDQGYADRNLIAKWKKPGYERL CCLRCIQPRDHNFATTCVCRVPKNIREEEVIECVHCGCKGCASGD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21110			G10 family protein (.1)		Lus10023881 [exp]	0	1
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	3.6	0.7719
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	4.2	0.7085
AT5G26200			Mitochondrial substrate carrie...		Lus10026466 [exp]	4.9	0.6835
AT1G17070			GC-rich sequence DNA-binding f...		Lus10002251 [exp]	7.9	0.6764
AT5G51740			Peptidase family M48 family pr...		Lus10015019 [exp]	8.7	0.7141
AT2G27020		PAG1	20S proteasome alpha subunit G...		Lus10041296 [exp]	13.4	0.6923
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Lus10008680 [exp]	17.7	0.6804
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10015054 [exp]	22.2	0.6023
AT4G09550		ATGIP1	ARABIDOPSIS ATGCP3 INTERACTING...		Lus10040621 [exp]	26.9	0.6672
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	29.5	0.6211

Compare expression of checked genes

Lus10023881 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.