Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 419 / 4e-137 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 416 / 1e-135 SCPL46 serine carboxypeptidase-like 46 (.1) AT1G48410 400 / 3e-123 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT2G27880 390 / 9e-120 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT5G43810 378 / 2e-115 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT5G42240 308 / 1e-94 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 307 / 2e-94 SCPL41 serine carboxypeptidase-like 41 (.1) AT1G43780 303 / 1e-92 SCPL44 serine carboxypeptidase-like 44 (.1) AT2G12480 280 / 1e-84 SCPL43 serine carboxypeptidase-like 43 (.1.2) AT2G24000 277 / 3e-83 SCPL22 serine carboxypeptidase-like 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014386 [exp] 744 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10030315 [exp] 680 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10014388 [exp] 618 / 0 AT1G28110 373 / 8e-125 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 580 / 0 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 578 / 0 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 577 / 0 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 573 / 0 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 573 / 0 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10030317 [exp] 572 / 0 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 529 / 2e-179 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 524 / 2e-177 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 517 / 1e-174 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G118600 [exp] 516 / 2e-168 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G036400 [exp] 480 / 3e-160 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 472 / 2e-157 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 419 / 4e-137 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 419 / 8e-137 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 414 / 3e-135 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.009G001500 [exp] 422 / 8e-132 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10023882 pacid=23160738 polypeptide=Lus10023882 locus=Lus10023882.g ID=Lus10023882.BGIv1.0 annot-version=v1.0 ATGAGGAGCTCTCAGTCATGGATTATTGTTATGTTCATAATTTCTGGAGCAATTTGCAGGAAAGTTGAGTCATCATCGTCGTCAAATGAAGCTGACAAGA TAGTGAAGCTTCCAGGGCAGCCAGATGATGTCAGCTTCCAACAGTATGCAGGGTATGTGACTGTTGATGAAACCCAGCAAAGGGAACTTTTCTACTACTT CGTTGAAGCTGAGACTAACTCCTCTTCAAAGCCTCTCGTTCTTTGGCTCAATGGAGGACCCGGATGCTCCTCCATTGGGGCAGGTGCTTTCACCGAGCAC GGTCCTTTCAGGCCAACTTATGATGGTGCCAGTTTGGTTAGAAATGACTATAGCTGGAACAAAGAAGCAAACGTTATATACTTGGAATCTCCAGCAGGAG TTGGCTTCTCGTATTCTGCAAATCAGTCTTTCTATGACTTGGTAAATGATACCATAACTGCCAATGACAACTTGGTGTTCCTGCAACGATGGCTGCTCAA GTTTCCTGAATACAAGAACAGAGATTTTTACATCACTGGAGAGAGCTATGCCGGTCACTATGTGCCCCAACTAGCACAGCTATTTCTGGAGTCGGGATCA AATCTCACCTTGAAAGCCATAGCTATAGGAAACCCATTGCTGGAATTCAACACGGATTTCAACGGGGAAGGAAAATACTACTGGTCTCACAGCTTGATTT CGGACCGTACCTACCGCCTCATCAACACAATCTGCAACACCTCCCAGCTCAGGAGAGAGTCCGCGACAGACACATTTTCCCCGCCGTGCAACATCGTCGC AACTCGACTTGCTGCCGAAATTCCAGACAAATATTCGTTCGATACGTACGATGTCACTTCAGACGTTTGCTTATCTTATGGTGACGTGTCCCAGTCATCA CTGGAGCCTTTAGTTGCAGCTTTCCACCCATTTTCCGCCCTCCGGTCCAGCCAAGGCTCTCACAGGAATTTCGTAAGTTCCCCCTCGCAGAAATCGGAGG AATCTGTAGACGTTTGTACGCGAGATAACGCGGGGGTGTACTTGAACAGAAAAGATGTCCAGGATGCCATCCATGCCAAGCTTGTAAACGTCCCGGGCTG GAATTCGTGTAGCTACGTTGTGAATTACGACGACGACAATTTGGAGATTCCAACAATCGGAGTGGTGGGTTCGTTGGTGGGTTCGGGGATCCGAGTACTA GTTTACAGTGGAGATCAAGATTCGGTGCTCCCATTTATAGGGACGAGGGTTTTGGTCAATCGTCTCGCGAAACGGATGAGATTGAACACGACCGTGTCGT ACAGACCATGGTTTGACGACGACAAACAGGTTTCTATTAAGCCTGAAGTTACCTCTAGGAAGGTTAATAGGCTGATAATCGAACAGCTATTGGAGAAAAA CAAGAACGAGTTCTCTGGCAGAATGCCTGCCTACGATGGACGGAAAGGTTTATACACAGCAGGGCCTCTGTCATTCACCACTAAGGACTTTACTGTTAAA CTTCGTGACGAGGGCAAAGCTGGTTCCACCAGGAACGAGAGAGAATTTGACGTTGCTGTGAAGTTTGCTGCCAGAGTCAATTTGAACCACCTGCAGGATT TCCTTATGGCGAGAAGAAGGGACGCTCCTCACGAGACTATTCAAGCTCTAGACGTAGTGCTCAGAGAGTCTCCTTCAAACAATTGCATTGTTGTTGGCCG ATCTTTCTTTGGCGCTCAATTTGGCAGCAGAAATCCATTAGGAGGTGGAGTCGAATGTTGGACTGGGTACTACCAGAGCCTTCGGCCAACGCAGATGGGC ATGTCACTTAATTTGGATGTCTCTTTCACTGCCTTCTATGAGGGGATCAGTGTTACTGAATTCGTGAGGAAAGCGTTGAAGGGGATTAGAATAGAGGTTA CTCATGGGGAGAACAAGCGTTACAAAATCACTGGCCTATCTCAGCAGCCACTGAACCAGCTAAGGTTTACTGACAGGGACGGGACACAACTTTCAGTTGT GAACTATTTCTTAGAAAAATACAATATCAGGCTTCAGCATACTTCTTGGCCTGCTCTGCAGTCTGGAAACGATGCAAGGCCTATATATTTGCCAATGGAG GCCTGCAAGCGTCCCAACGATAGGCGTGCGAGCATCAAAGAGATTGTCCAATCTAATAACTATGAGAAAGATGAGCTGGCAAATGAATTTGGTATTAGTA TTAAGGACGAGATGGCTTCCATCAATGCCCGAGTGCTTCCTCCTCCAGTGCTCAAGTATCACGATTCTGGCAAGGATATTACTCTAAGGCCACGGGTGGG TCAGTGGAACATGATAAACGCTAAAATGTTCAATGGTGTGACTATCAACTCTTGGACGTGTGTAAACTTCTCCACTCTAACAGATTTTGTGGCTGCTGGA TTCGCTCAGAATCTAATGAACATGTGCGGCAACAAGGGATTGAATGTTAATCCTCAACCAGTCTTGCAAATCAAATCAAGCCGGCCTGAGAAAATTGAGA ATACATTAATGGAGGCTGGTGGTCGAAATGCAGTACTTCAGAATGCAATCAACAGAAGGATACCACTTTTGAGCGATGCCCCGACGATAATATTTGGAGC GGATGTGACACATTCTGCCTGCCATGCTGGCATCCAGGGAACAAGCCGTCCTGTCCACTATCATGTGCTATACGATGAGAACAAATACAGCTCGGATAAA TTGCAGACGGTGACCAATGATCTTTGCTACACCTACGCTAGATGCACTCGTTCCGTCTCTGTCGTACCTCCAGCGTACTACGCTCATCTCGCTGCTTTCC GAGCGAGGTACTACTTAGAAGGTGAACCGGGCATTGCATCAGACAGTGGCTCTGGGATTGGAGGTCCAGCTGGTGGGAGGAGGGAGGCAAGGCCGATAGT TCCATTGCCAGAGATGAATGCGAAGGTGAAGAACGTGATGTTCTTCTGTTGA
AA sequence Show only first row Show all	>Lus10023882 pacid=23160738 polypeptide=Lus10023882 locus=Lus10023882.g ID=Lus10023882.BGIv1.0 annot-version=v1.0 MRSSQSWIIVMFIISGAICRKVESSSSSNEADKIVKLPGQPDDVSFQQYAGYVTVDETQQRELFYYFVEAETNSSSKPLVLWLNGGPGCSSIGAGAFTEH GPFRPTYDGASLVRNDYSWNKEANVIYLESPAGVGFSYSANQSFYDLVNDTITANDNLVFLQRWLLKFPEYKNRDFYITGESYAGHYVPQLAQLFLESGS NLTLKAIAIGNPLLEFNTDFNGEGKYYWSHSLISDRTYRLINTICNTSQLRRESATDTFSPPCNIVATRLAAEIPDKYSFDTYDVTSDVCLSYGDVSQSS LEPLVAAFHPFSALRSSQGSHRNFVSSPSQKSEESVDVCTRDNAGVYLNRKDVQDAIHAKLVNVPGWNSCSYVVNYDDDNLEIPTIGVVGSLVGSGIRVL VYSGDQDSVLPFIGTRVLVNRLAKRMRLNTTVSYRPWFDDDKQVSIKPEVTSRKVNRLIIEQLLEKNKNEFSGRMPAYDGRKGLYTAGPLSFTTKDFTVK LRDEGKAGSTRNEREFDVAVKFAARVNLNHLQDFLMARRRDAPHETIQALDVVLRESPSNNCIVVGRSFFGAQFGSRNPLGGGVECWTGYYQSLRPTQMG MSLNLDVSFTAFYEGISVTEFVRKALKGIRIEVTHGENKRYKITGLSQQPLNQLRFTDRDGTQLSVVNYFLEKYNIRLQHTSWPALQSGNDARPIYLPME ACKRPNDRRASIKEIVQSNNYEKDELANEFGISIKDEMASINARVLPPPVLKYHDSGKDITLRPRVGQWNMINAKMFNGVTINSWTCVNFSTLTDFVAAG FAQNLMNMCGNKGLNVNPQPVLQIKSSRPEKIENTLMEAGGRNAVLQNAINRRIPLLSDAPTIIFGADVTHSACHAGIQGTSRPVHYHVLYDENKYSSDK LQTVTNDLCYTYARCTRSVSVVPPAYYAHLAAFRARYYLEGEPGIASDSGSGIGGPAGGRREARPIVPLPEMNAKVKNVMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10023882 [exp]	0	1
AT4G37850	bHLH	bHLH025	basic helix-loop-helix (bHLH) ...		Lus10039640 [exp]	1.4	0.8918
AT5G36930			Disease resistance protein (TI...		Lus10002247 [exp]	4.2	0.8876
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	8.1	0.8712
AT5G36930			Disease resistance protein (TI...		Lus10000153 [exp]	13.6	0.8506
AT5G23750			Remorin family protein (.1.2)		Lus10001477 [exp]	18.5	0.8893
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10011405 [exp]	20.3	0.8722
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10024044 [exp]	21.4	0.8377
AT5G67265			unknown protein		Lus10042633 [exp]	23.5	0.8330
AT5G58880			unknown protein		Lus10005869 [exp]	29.2	0.8410
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	45.2	0.8076

Compare expression of checked genes

Lus10023882 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.