Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36650 93 / 5e-21 unknown protein AT3G25690 47 / 2e-05 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G52080 46 / 2e-05 AR791 actin binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014389 [exp] 372 / 1e-129 AT2G36650 95 / 5e-22 unknown protein Lus10025846 [exp] 45 / 7e-05 AT1G52080 337 / 4e-108 actin binding protein family (.1) Lus10034382 [exp] 45 / 9e-05 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034264 [exp] 45 / 0.0001 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10038254 [exp] 43 / 0.0003 AT1G52080 333 / 2e-106 actin binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098400 [exp] 121 / 7e-31 AT2G36650 142 / 4e-38 unknown protein Potri.001G191300 [exp] 50 / 2e-06 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.010G130800 [exp] 43 / 0.0004 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023883 pacid=23160741 polypeptide=Lus10023883 locus=Lus10023883.g ID=Lus10023883.BGIv1.0 annot-version=v1.0 ATGGAAGACTCATCAAAGAGCATCATCATCATCAAGCCGGCATTCCTCAAAGCAGGGATCCCTCTCGCGATCACCGCAGCAGGTTTCGCAATCTCCAAAA TCGTATCCTCCTCCAGCAAGAAGACGGCAGCCCTAATTGAAGAAGAAGAAGAAGAAGAAGAATTGGGGTTTGCGATGAGCAGGATCGAGGGCAGGGAGGC GGAAATGGAGCTGGAATCGGCGTTGGCGGTGGAGAGGGCGCGAGCTGGATTCCTGGAGAGGGAGATATCCTCGCTGGAAATGGGGAAGCGGAGGTTTGAA GCGTTGGTGAAGGAGTACGAGAGAGTTGTGCAGAGGCTGGAAGTGGCGGGTTTGAGGAATGAGTTGCTTGAAGGGAAGGTGCGGAGGATGGTGAGGAAAG TCAGAGGGCAGGAGAGGTTGATTGTGGAGAAAGGTGAGAGAGTTGGGGAATTGGAAGCTGAGATTTTGAATTGTTTGGAGGAATTGGAGAGGAGGAATGA TATGATTGATAGATTGGAAGAGGATGTTGATAAATTGAAGGCTGATTTGGCGGTGAAGCTCAGTACAGAAGAGAAGGCTGCTGCTGCACAAAAGCAGAAT AATGAGGAGTTAGTGCGGGTTGAAGACTACAACCGCATAGCAAAAGAGCTAGACCAAGCACGAACAAACCAGGTAGCAGAAACCACAGAGATAACTTACT TGAGATGGACCAACGCATGCCTTAGGCATGAACTCATGAGAAGCTATCAACTACAGCAACAACTCCGGTCAGAGCTGGTTGACGGCGAATCTCATCATCA TCACGACAAAGAAGAAGACCACCACGAATCTTCTTCTTCCCCTGATCGTCACCATCATTCTTCCAGGAGGAAGAAGTTGATTCACAAGCTTAAGAAATGG GTTGAAGGGAGTGATGAGAACAACAACAGCCATTTCCACTCCAAGAACAACCAGGGCAACAAGTGCATTGGATGGATGCCTGTTTTCGACGAAGGAGACG AAGAAGATCGAGATAATGGAGATGTAGCTGCTCGTAGAAGATCTTGTTCTAGTCTATGA
AA sequence Show only first row Show all	>Lus10023883 pacid=23160741 polypeptide=Lus10023883 locus=Lus10023883.g ID=Lus10023883.BGIv1.0 annot-version=v1.0 MEDSSKSIIIIKPAFLKAGIPLAITAAGFAISKIVSSSSKKTAALIEEEEEEEELGFAMSRIEGREAEMELESALAVERARAGFLEREISSLEMGKRRFE ALVKEYERVVQRLEVAGLRNELLEGKVRRMVRKVRGQERLIVEKGERVGELEAEILNCLEELERRNDMIDRLEEDVDKLKADLAVKLSTEEKAAAAQKQN NEELVRVEDYNRIAKELDQARTNQVAETTEITYLRWTNACLRHELMRSYQLQQQLRSELVDGESHHHHDKEEDHHESSSSPDRHHHSSRRKKLIHKLKKW VEGSDENNNSHFHSKNNQGNKCIGWMPVFDEGDEEDRDNGDVAARRRSCSSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36650			unknown protein		Lus10023883 [exp]	0	1
AT2G36650			unknown protein		Lus10014389 [exp]	1.7	0.9652
AT1G35470			SPla/RYanodine receptor (SPRY)...		Lus10009445 [exp]	2.8	0.9526
					Lus10038232 [exp]	3.2	0.9622
AT1G29380			Carbohydrate-binding X8 domain...		Lus10015259 [exp]	3.7	0.9454
AT1G69880		ATH8	thioredoxin H-type 8 (.1)		Lus10037225 [exp]	5.2	0.9532
AT3G19910			RING/U-box superfamily protein...		Lus10029693 [exp]	6.3	0.9495
					Lus10025868 [exp]	7.3	0.9492
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039702 [exp]	8.0	0.9430
AT4G05430			Carbohydrate-binding X8 domain...		Lus10038529 [exp]	8.5	0.9339
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10039864 [exp]	10.2	0.9330

Compare expression of checked genes

Lus10023883 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.