Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 831 / 0 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G11640 104 / 2e-24 ATSR serine racemase (.1) AT3G61440 61 / 2e-09 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT4G14880 47 / 2e-05 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT5G28030 46 / 5e-05 DES1 L-cysteine desulfhydrase 1 (.1.2) AT2G43750 46 / 6e-05 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT3G03630 46 / 7e-05 CS26 cysteine synthase 26 (.1) AT5G28237 46 / 8e-05 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT3G59760 45 / 0.0001 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G22460 42 / 0.0009 OASA2 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014390 [exp] 1090 / 0 AT3G10050 845 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10027728 [exp] 860 / 0 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 701 / 0 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10008490 [exp] 116 / 3e-28 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10020520 [exp] 97 / 1e-22 AT3G10050 94 / 5e-23 L-O-methylthreonine resistant 1 (.1) Lus10014765 [exp] 59 / 6e-09 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 54 / 2e-07 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 53 / 3e-07 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10009521 [exp] 50 / 4e-06 AT3G03630 432 / 2e-150 cysteine synthase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 893 / 0 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1) Potri.001G106000 [exp] 100 / 1e-22 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.002G160800 [exp] 59 / 5e-09 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 59 / 6e-09 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.008G153300 [exp] 53 / 3e-07 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 52 / 5e-07 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 52 / 6e-07 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 49 / 4e-06 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.019G045800 [exp] 49 / 5e-06 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1) Potri.005G048066 [exp] 49 / 6e-06 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF00585 [flax] [poplar] Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10023884 pacid=23160697 polypeptide=Lus10023884 locus=Lus10023884.g ID=Lus10023884.BGIv1.0 annot-version=v1.0 ATGGAGGCTCTCCGCCCAGCGCCACCGCAGCATCCGCCACTCCTTCGGAGAACCAGGGAAGCCGAATTCCATGCTCCATTGCTGCTAGCAGCTGGACGCC GTTGTCACGAGCGGAGAGCAGGAGGAAGAAGGATCTCCCCCGCTCTATCGAAATCGATGGCCACGGATATATCACCATTTAAACCTCCGAAAGTCGATTT TTCTTCGTTGTCAGCACCACCGGCGGTGGTGGTGGGTGCTCCTGCTCCCGTGGAGAGGAAGACAGTTTCGCCGAGCTCGCTACAGTATCCGCCTGGTTTC CTCGGGGCGGTACCAGAAACGAATGGTGAAGATCGGAGCGACAATGTCATCGGCGCCATGGCGTATTTGACCAGTATGCTTACGTCCAAGGTTTACGATG TGGCGATTGAATCTCCGCTGCAGTTTGCGCCCAAGTTATCGGAGAAACTCGGTGTCAAGGTCTGGCTGAAACGGGAGGATCTTCAGCCTGTATTTTCATT CAAGCTGAGAGGTGCATACAACATGATGGCCAAACTTACAAACGAACAGCTAGAAAGAGGAGTCATATGTTCATCAGCTGGAAACCATGCCCAAGGTGTT GCACTATCTGCCAAAAGACTGGGTTGCAATGCTATCATTGCTATGCCTGTCACTACACCTGACATCAAGTGGAAATCAGTTGAAAGATTAGGTGCCACGG TTGTTCTGGTTGGAGATTCGTATGACGAGGCACAAGCATATGCTAAACAGAGAAGCAAACAGGAGGGTTTGACGTTTGTACCTCCTTTTGATCACCCAGA GGTGATTATAGGACAAGGAACCGTTGGTATGGAGATCTTTCGCCAGATTCAAGGCCCTGTACATGCTATCTTCGTGCCTGTCGGTGGTGGGGGTTTAATA GCTGGCATTGCTGCATATGTAAAGAGGGTTAATCCTGATGTAAAGATCATTGGAGTTGAACCAGCAGATGCAAATGCTATGGCATTGTCATTGCATCACA ACCAAAGAGTGATATTGGACCAGGTTGGAGGGTTTGCAGATGGTGTGGCTGTGAAAGAGGTTGGGGAGGAAACTTTCCGGTTATGCAAGGAATTGATTGA TGGTGTAGTTCTAGTAAGCCGGGATGGTATCTGCGCTTCCATAAAGGACATGTTTGAAGAAAAAAGGAGCATATTAGAGCCAGCAGGTGCTCTTGCTCTT GCTGGTGCTGAAGCGTACTGCAAATATTATGGCCTAAAGGGAGAAAATGTCGTGGCGATAACCAGTGGGGCAAATATGAACTTTGATAAACTGAGAGTGG TAACTGAGCTTGCCAATGTTGGCAGACAACAAGAAGCTGTGCTTGCAACAGTCATGCCTGAGGAGCCTGGGAGCTTCAAAAACTTCTGTGAACTGGTGGG TCCTATCAATATAACCGAGTTCAAGTACAGAAGAAATTCTGAGAAGAAGGCGGTTGTTCTGTACAGTGTTGGCCTCCATATGGCTTCTGAACTTGATGCC ATGAAGCAGCGGATGGAATCAGCTCAGCTAAGAACTCACAATCTGACAGAAAGTGATCTGGTCAAAGACCACTTGCGTTACTTGATGGGCGGCAGATCAA CTGTTCGAGACGAGGTTCTGTGTCGACTGGTCTTTCCGGAGAGGCCAGGCGCTTTGATGAAGTTCCTCGATACGTTCAGTCCTCGCTGGGACATTAGCTT GTTCCACTACAGAGGCCAGGGCGAAACAGGCGCAAACGTGCTGGTCGGAATCCAAGTTCAGCAGAGCGAGATGGGCGAGTTCTACAGCCGGGCCAACTGT CTCGGATACGATTTCGTCATTGTTACTGATGACGACAAGTTCCAGCTTCTGATGCAGTAA
AA sequence Show only first row Show all	>Lus10023884 pacid=23160697 polypeptide=Lus10023884 locus=Lus10023884.g ID=Lus10023884.BGIv1.0 annot-version=v1.0 MEALRPAPPQHPPLLRRTREAEFHAPLLLAAGRRCHERRAGGRRISPALSKSMATDISPFKPPKVDFSSLSAPPAVVVGAPAPVERKTVSPSSLQYPPGF LGAVPETNGEDRSDNVIGAMAYLTSMLTSKVYDVAIESPLQFAPKLSEKLGVKVWLKREDLQPVFSFKLRGAYNMMAKLTNEQLERGVICSSAGNHAQGV ALSAKRLGCNAIIAMPVTTPDIKWKSVERLGATVVLVGDSYDEAQAYAKQRSKQEGLTFVPPFDHPEVIIGQGTVGMEIFRQIQGPVHAIFVPVGGGGLI AGIAAYVKRVNPDVKIIGVEPADANAMALSLHHNQRVILDQVGGFADGVAVKEVGEETFRLCKELIDGVVLVSRDGICASIKDMFEEKRSILEPAGALAL AGAEAYCKYYGLKGENVVAITSGANMNFDKLRVVTELANVGRQQEAVLATVMPEEPGSFKNFCELVGPINITEFKYRRNSEKKAVVLYSVGLHMASELDA MKQRMESAQLRTHNLTESDLVKDHLRYLMGGRSTVRDEVLCRLVFPERPGALMKFLDTFSPRWDISLFHYRGQGETGANVLVGIQVQQSEMGEFYSRANC LGYDFVIVTDDDKFQLLMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10023884 [exp]	0	1
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Lus10026312 [exp]	4.0	0.8389
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10027733 [exp]	6.5	0.8405
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	10.8	0.8760
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10034105 [exp]	15.9	0.8307
AT4G22930		PYR4, DHOASE	DIHYDROOROTASE, pyrimidin 4 (....		Lus10033681 [exp]	24.5	0.8545
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	25.1	0.8604
AT5G26230		MAKR1	membrane-associated kinase reg...		Lus10021928 [exp]	40.2	0.8529
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	41.5	0.8496
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Lus10000884 [exp]	44.5	0.7912
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	45.3	0.8320

Compare expression of checked genes

Lus10023884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.