Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36660 524 / 6e-180 PAB7 poly(A) binding protein 7 (.1) AT1G71770 421 / 5e-139 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT1G22760 419 / 2e-138 PAB3 poly(A) binding protein 3 (.1) AT4G34110 416 / 1e-137 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G49760 411 / 4e-135 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 379 / 6e-123 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G16380 337 / 3e-108 PAB6 poly(A) binding protein 6 (.1) AT1G34140 271 / 2e-84 PAB1 poly(A) binding protein 1 (.1) AT1G49600 113 / 2e-26 ATRBP47A RNA-binding protein 47A (.1) AT3G19130 109 / 2e-25 ATRBP47B RNA-binding protein 47B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014392 [exp] 1135 / 0 AT2G36660 594 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 858 / 0 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 811 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10010042 [exp] 416 / 2e-137 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 397 / 5e-130 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 397 / 7e-130 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 393 / 3e-128 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10021396 [exp] 359 / 2e-116 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10012070 [exp] 115 / 1e-27 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 412 / 4e-136 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.014G025400 [exp] 400 / 2e-131 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 396 / 9e-130 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.005G198500 [exp] 394 / 5e-129 AT1G22760 623 / 0.0 poly(A) binding protein 3 (.1) Potri.009G099300 [exp] 392 / 3e-128 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 389 / 9e-127 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.001G191500 [exp] 347 / 6e-112 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.014G034600 [exp] 115 / 2e-27 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.002G128100 [exp] 112 / 2e-26 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.009G105300 [exp] 110 / 1e-25 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10023885 pacid=23160662 polypeptide=Lus10023885 locus=Lus10023885.g ID=Lus10023885.BGIv1.0 annot-version=v1.0 ATGGCGGTCCCCCCTACGGCTTCGGCGACGGCGACTATTCCGGCGGCGTCTCTGTACGTCGGAGACCTCCACCCGGACACCGACGACGTTAAGCTCCGCG TTGCGTTCTCCGAGTTCAAGAGCTTGGATACCGTCCGCGTGTGTCGAGACTCCAACACCGGGAGGTCTCTCTGTTACGGTTACGTCAACTTCATGTCTCC ACATGAAGCTGTGCAAGCTATGGAGATGAAGAACCATACTCAACTGAATGGAAAAGCAATGAGAGTTTCATGGGCACACCGAGATCCTGATGCAAGGAAG AGTGGAGTAGGAAATGTGTTTGTTAAGAATTTGAATGACTCTGTTACAAATGTTGCACTGCAAGAGCTATTTGGAAAATATGGGAATATCGGGTCTTGCA AAGTTGCAATGTCCGATGATGGAAAGACTAAAGGCCATGGCTTTGTTCAATTTGATAGCGAGGAATCTGCAAAGTCTGCCATTGAAAAGCTAAATGGCTG TATGTTTCATGATAAGCAGATGTATGTCGGAAAATTCGTTAAAAGAAGTGATCGAGCTTTCTCCAGCCCTGATGCTAAATACACTAATCTGTATTTTAAG AACTTGGAGCTAGATGTCACAGAAGAGCTTCTGCATGAGAAATTTTCCAAGTATGGCACTGTGTCTAGTTTGGTAGTCGCCAGAGATGACAGTGGATCCT CTAGGGGTTTTGGCTTTGTGAATTTTGCCAATTCAGATGATGCTAAACGTGCTGTAGAGGCAATGAATGGGATTGAACTCGGATTAAAGACGCTATATGT TGGAAGGGCACAGAAGAAAGCTGAGCGGGAGCAGATTCTCCGTCGTCAGTTTGAAGAGAAACGAATGGAGCAGATATTGAAATACAAGGGTTCTAATGTG TATGTTAAGAACATAGATGATGATGTTACTGATGAAGAACTGAGAGAACACTTCAGCCAGTGTGGGACAATCACTTCTTCCAAGCTTATGAGAGACGACA AAGGACAAAGTAAGGGTTTCGGTTTTGTCTGCTTCTCCAACCCTGAGGAAGCTAATAAAGCAGTGAACACATTCCATGGAGGCATGTTTCACCGCAAGCC ATTGTACGTTGCTATTGCTCAAAATAAGGAGGATAGGCAAGTCCAATTGCAGATGCAATATGCACATCACATGGTTGGACTACCGGGACCTTCAACTGCT GTTATGCCTGCTGGATATCCCCCTTTTATCTACACAGCTCCATCCGGTCTTGTTTCTCAAGTACCTCCACGGCCTGGACTTATGTACAACCCTTTTGGTA TGATTAGGCCAGGATGGAGAGGTAATAGCTTTGCTCCTGCAATGAGACCAGCATATCAACAACCACCGCAGTTTCCCCTGATGCTTAATGTTCAAAGGCA ACAAAGGCCAAACAGGGTAAGGGTGACTGGCAATACGCTCCCTCAAGTTGCAAATTCTCCTTTCTGTATGCAACTTGCTTCTCAACCTCTCCCTTCGCCG AAAGATCATAACAACCAGGCCAGTATAACTAGGTTCTTTTGCATAAAGAAACAGAGGATTCCACAAGCTAAATACGTCCCAAGTGGTCGTTCACGCGAGT CGATCAAAGGGTCTTCGAATTCTTCTGGGAAAACAGAGATGCTAAGCACAATGCTAGCCGCTGCTTCCCCAGAGAGTCAGAAACAAATTCTAGGGGAGTA TCTATACCCCCTCGTCGAGCAGCATAACCCTGAACTTTGCTCAAAGATAACAGGAATGCTACTGGAGATGGACAATGGAGAGCTGCTTCTGTTGTTGGAG TCGCCAGAGTCGCTGGCTGCAAAGGTGGAAGAAGCTGTGCAGGTTCTTAAGATGTCGAGTATCGCTGTTTCGGGGCAAGACACCAATATGCATTCCAGCA ATTACCACATCTCTCCTGAGGTTGCTGTCAATTGA
AA sequence Show only first row Show all	>Lus10023885 pacid=23160662 polypeptide=Lus10023885 locus=Lus10023885.g ID=Lus10023885.BGIv1.0 annot-version=v1.0 MAVPPTASATATIPAASLYVGDLHPDTDDVKLRVAFSEFKSLDTVRVCRDSNTGRSLCYGYVNFMSPHEAVQAMEMKNHTQLNGKAMRVSWAHRDPDARK SGVGNVFVKNLNDSVTNVALQELFGKYGNIGSCKVAMSDDGKTKGHGFVQFDSEESAKSAIEKLNGCMFHDKQMYVGKFVKRSDRAFSSPDAKYTNLYFK NLELDVTEELLHEKFSKYGTVSSLVVARDDSGSSRGFGFVNFANSDDAKRAVEAMNGIELGLKTLYVGRAQKKAEREQILRRQFEEKRMEQILKYKGSNV YVKNIDDDVTDEELREHFSQCGTITSSKLMRDDKGQSKGFGFVCFSNPEEANKAVNTFHGGMFHRKPLYVAIAQNKEDRQVQLQMQYAHHMVGLPGPSTA VMPAGYPPFIYTAPSGLVSQVPPRPGLMYNPFGMIRPGWRGNSFAPAMRPAYQQPPQFPLMLNVQRQQRPNRVRVTGNTLPQVANSPFCMQLASQPLPSP KDHNNQASITRFFCIKKQRIPQAKYVPSGRSRESIKGSSNSSGKTEMLSTMLAAASPESQKQILGEYLYPLVEQHNPELCSKITGMLLEMDNGELLLLLE SPESLAAKVEEAVQVLKMSSIAVSGQDTNMHSSNYHISPEVAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10023885 [exp]	0	1
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	6.2	0.7774
AT5G23400			Leucine-rich repeat (LRR) fami...		Lus10041010 [exp]	15.9	0.7072
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	23.2	0.7216
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10026874 [exp]	35.5	0.7032
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	58.0	0.6798
AT1G74160			unknown protein		Lus10034678 [exp]	72.6	0.6816
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	85.7	0.6730
AT3G55550			Concanavalin A-like lectin pro...		Lus10010867 [exp]	117.8	0.6226
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	121.2	0.6680
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10019391 [exp]	140.0	0.6561

Compare expression of checked genes

Lus10023885 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.