Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53110 598 / 0 LOS4 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72730 223 / 2e-67 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 221 / 1e-66 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 214 / 3e-64 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 210 / 1e-62 EIF4A-2 eif4a-2 (.1.2) AT1G51380 202 / 7e-60 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 196 / 2e-56 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 194 / 2e-55 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 191 / 2e-54 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 184 / 8e-53 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014393 [exp] 956 / 0 AT3G53110 603 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017407 [exp] 219 / 6e-66 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 209 / 4e-62 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10017804 [exp] 191 / 1e-54 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014260 [exp] 187 / 1e-53 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10014783 [exp] 188 / 3e-53 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017153 [exp] 182 / 6e-52 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 181 / 2e-51 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 181 / 2e-51 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119000 [exp] 745 / 0 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093900 [exp] 228 / 2e-69 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 224 / 7e-68 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G225700 [exp] 218 / 1e-65 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 218 / 1e-65 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 218 / 2e-65 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 217 / 3e-65 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 191 / 2e-54 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 189 / 1e-53 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 184 / 9e-53 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10023886 pacid=23160758 polypeptide=Lus10023886 locus=Lus10023886.g ID=Lus10023886.BGIv1.0 annot-version=v1.0 ATGGCGGACAAGGAATCCACCGTTAGCGCCGAATCCACCACTACCGCCGAATCCACTACCTCAGAGGTCGTCGAGAAGAAGACTACACCGGAGCCGAAGC GTTTATGGAGTGACGAGGTAGACGATCCTTCAGAGGTAGGAATGCTTCCGCCGCCGCTGCCGGCTGCGGAAGGTCCTTCGAAATCCGATGTCTCCGAACT CGACCTCGAGACGTTAAAGATCGACGCCGAGAAGAAGAATGTGAACGAGTTTCTGGAAGAGCCAGAGGACTCCACCATCCAAGCGGTTACTACTGGTGAA ACGCCGTATACATCTGCATCTACGTTTGAAGAGCTGAACCTCTCGCCAGAGTTGCTGAAAGGTTTATATGTAGAGATGAAGTTTGCGAAGCCTAGTAAGA TTCAGGCCATTAGTCTGCCGATGATGCTGACTCCTCCCTACAAGGATTTGGTTGCTCAGGCACATAATGGTTCGGGCAAGACAACCTGTTTTGTGCTTGG GATGCTCAGTCGTGTAGATCCGTCGGAGCGAGCTCCTCAGGCTCTCTGCATTTGTCCCACGAGAGAATTGGCTATTCAGAATATAGAAGTTCTACAGAAG ATGGGGAAGTACACTGGGATTACCTCCGAATGTGCTGTCCCTATGGACACTGGCAATGACAGGTTCAAACCCCGGCCTCCGGTATTTGCTCAAGTTGTAG TTGGGACCCCGGGAACCATTAAAAGGCTAATGTCTCACAAAAAACTAAGCATACAAAAGATGAAGGTTCTGGTATTTGACGAGGCAGATCACATGCTGGC AAAGGATGGTTTTCAAGACGACTCCATTAGGATCATAAAGGACATCGAAAAAGCCCAACTTAAAGTTCAGGTCCTTCTATTCTCAGCCACATTTGATGAG AACGTGAAGAATTTTGTTCCTAGGGTTGTCAAGGACTACAACCAGCTCTTTGTTAAGAAGGAAGAACTATCTTTGGCATCTGTTAAGCAGTACAAGGTTT ACTGCCCTGATGAGATGTCCAAGATTCTTGTGATCAAAGACAGAATTCTTGAACTTGGAGAGAAAGTCGGGCAGATAATAATATTCGTCAACTCCAAGAG ATCTGCAGCCATGCTCCACACTTCCTTAGTCGACTTCGGCTACGAAGTTACAACCATACACGGTGCCCTTAATCACGAAGACCGTGATAAAATTGTCAAG GAGTTCAAGGACAACTTGACAAAAGTCCTGATTTCAACCGACGTACTTGCCCGAGGTTTCGACCAGCAACGGGTTAATTTGGTCATCAACTATGACCTCC CGATCAAGTACGACAACTCAGAGCCTCGGCCGTCCCGTAGGACTCCTCCAGAGCCTCATTTCGAGGTGTACCTCCACAGGATCGGTAGAGCAGGGCGTTT CGGCAGGAAAGGAGCTGTGTTCAACTTAATCATGAACGACACCGACCAGATGCTCCTGGAAAAGATTGAGAGGTACTTTGACAGTCCTGCAGTCGAGGTT CCGTCGTGGGAGAGCGAAGAGGACTTCTCAGCGGCTCTCAAGTCTGCTGGCTTGCTCTAA
AA sequence Show only first row Show all	>Lus10023886 pacid=23160758 polypeptide=Lus10023886 locus=Lus10023886.g ID=Lus10023886.BGIv1.0 annot-version=v1.0 MADKESTVSAESTTTAESTTSEVVEKKTTPEPKRLWSDEVDDPSEVGMLPPPLPAAEGPSKSDVSELDLETLKIDAEKKNVNEFLEEPEDSTIQAVTTGE TPYTSASTFEELNLSPELLKGLYVEMKFAKPSKIQAISLPMMLTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPSERAPQALCICPTRELAIQNIEVLQK MGKYTGITSECAVPMDTGNDRFKPRPPVFAQVVVGTPGTIKRLMSHKKLSIQKMKVLVFDEADHMLAKDGFQDDSIRIIKDIEKAQLKVQVLLFSATFDE NVKNFVPRVVKDYNQLFVKKEELSLASVKQYKVYCPDEMSKILVIKDRILELGEKVGQIIIFVNSKRSAAMLHTSLVDFGYEVTTIHGALNHEDRDKIVK EFKDNLTKVLISTDVLARGFDQQRVNLVINYDLPIKYDNSEPRPSRRTPPEPHFEVYLHRIGRAGRFGRKGAVFNLIMNDTDQMLLEKIERYFDSPAVEV PSWESEEDFSAALKSAGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10023886 [exp]	0	1
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10037763 [exp]	4.2	0.9346
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10013680 [exp]	5.7	0.9421
AT4G16180			unknown protein		Lus10037780 [exp]	6.6	0.9344
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	8.0	0.9355
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	10.1	0.9263
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10008605 [exp]	11.2	0.9141
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	12.4	0.8940
AT1G01910			P-loop containing nucleoside t...		Lus10041377 [exp]	13.3	0.8978
AT2G16595			Translocon-associated protein ...		Lus10007577 [exp]	15.9	0.9239
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	16.3	0.9277

Compare expression of checked genes

Lus10023886 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.