Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53120 228 / 2e-74 VPS37-1 Modifier of rudimentary (Mod(r)) protein (.1) AT2G36680 225 / 2e-73 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014395 [exp] 351 / 1e-122 AT2G36680 280 / 4e-96 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097000 [exp] 250 / 6e-83 AT3G53120 249 / 3e-84 Modifier of rudimentary (Mod(r)) protein (.1) Potri.006G119200 [exp] 238 / 2e-78 AT3G53120 269 / 6e-92 Modifier of rudimentary (Mod(r)) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF07200 [flax] [poplar] Mod_r Modifier of rudimentary (Mod(r)) protein
Representative CDS sequence Show only first row Show all	>Lus10023888 pacid=23160673 polypeptide=Lus10023888 locus=Lus10023888.g ID=Lus10023888.BGIv1.0 annot-version=v1.0 ATGTTCAAATTCTGGGGAAACCAGGAGCAGGATCCGCAGCAGCGGCCGCAAGACGTTGCTCAGTCGTGGTACCCTCCATCTTTAGTTGGAGGATCCTCCT CACAGGGCTCCTCTCGTCCAGGGACCCCGAGTGGTGGTTCTGCTAGTGGTGGATTTGGTTTGAATCGGCCTTTGGATACTCCTTCGCATGTTTCTCCAGC TGAAGCTGCTGGTGTTATTGCTCTTTTGAAGGATAAAAGGGGAAACCAGGAGCAGGATCCGCAGCAGCGGCCGCAAGACGTTGCTCAGTCGTGGTACCCT CCATCTTTAGTTGGAGGATCCTCCTCACAGGGCTCCTCTCGTCCAGGAACCGCGAGTGGTGGTTCTGCTAGTGGCGGATTTGGTTTGAATCGGCCTTTGG ATACTCCTTCGCATGTTTCTCCAGCTGAAGCTGCTGGTGTTATTGCTCTTTTGAAGGATAAAAGTGTGGATGATCTAAGGAGGCTACTGTCGGACAAAGA TGCATACAATCAATTTCTGTTTTCACTTGATCAGGTCAAGATACAAAATAATATACGAGATGAACTTCGCAAGGAGACGTTGCAGCTTGCAAGGGAAAAT ATGGACAAGGAGCCTCGCATAGTGGAGCTAAGAAATCAATGCCAGATCATACGAACGACAGAGCTGGCAGCCGCGCAAGAGAAACTGAACGAGCTGGAGA AAAAGAAGGACGAAATGCTGAGGTCCCGCTCCCCAGCTTCCCTCCTTCACAAACTTCAAGAGGCGATGAGCAAGACAGATGACGAATCAGAAGCAATAAA TAGACAATTTCTCAACAGAGAGATCGATCTTGCAACATTTGTGCAGAGGTACAAAAAGCTCCGGACCACATACCAGAAGCGATCACTCATCCAGTTAGCA ACCAAGACATCGACAGGCTGA
AA sequence Show only first row Show all	>Lus10023888 pacid=23160673 polypeptide=Lus10023888 locus=Lus10023888.g ID=Lus10023888.BGIv1.0 annot-version=v1.0 MFKFWGNQEQDPQQRPQDVAQSWYPPSLVGGSSSQGSSRPGTPSGGSASGGFGLNRPLDTPSHVSPAEAAGVIALLKDKRGNQEQDPQQRPQDVAQSWYP PSLVGGSSSQGSSRPGTASGGSASGGFGLNRPLDTPSHVSPAEAAGVIALLKDKSVDDLRRLLSDKDAYNQFLFSLDQVKIQNNIRDELRKETLQLAREN MDKEPRIVELRNQCQIIRTTELAAAQEKLNELEKKKDEMLRSRSPASLLHKLQEAMSKTDDESEAINRQFLNREIDLATFVQRYKKLRTTYQKRSLIQLA TKTSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10023888 [exp]	0	1
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10010172 [exp]	1.0	0.8645
AT1G68100		IAR1	IAA-ALANINE RESISTANT 1, ZIP m...		Lus10042480 [exp]	5.3	0.8206
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	5.8	0.8417
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	6.0	0.8051
AT5G02040		PRA1.A1	prenylated RAB acceptor 1.A1 (...		Lus10021492 [exp]	8.3	0.7776
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	10.2	0.8245
AT5G18610			Protein kinase superfamily pro...		Lus10041426 [exp]	10.5	0.8181
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	10.5	0.8022
AT3G46010		ATADF1, ADF1	actin depolymerizing factor 1 ...		Lus10024417 [exp]	12.7	0.8097
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	13.4	0.8145

Compare expression of checked genes

Lus10023888 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.