Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 483 / 1e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 275 / 6e-90 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 270 / 7e-88 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 256 / 7e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 249 / 6e-80 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 218 / 4e-68 KUOX1 KAR-UP oxidoreductase 1 (.1) AT5G24530 216 / 3e-67 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 199 / 4e-60 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G38240 195 / 6e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 194 / 1e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014398 [exp] 716 / 0 AT2G36690 482 / 4e-171 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 231 / 5e-73 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 226 / 3e-71 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 224 / 6e-70 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10015573 [exp] 221 / 5e-69 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 220 / 1e-68 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10024882 [exp] 209 / 1e-64 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 203 / 2e-62 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 193 / 4e-58 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029700 [exp] 482 / 3e-171 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 461 / 6e-163 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 253 / 9e-82 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 253 / 3e-81 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.001G451900 [exp] 248 / 1e-79 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 247 / 5e-79 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 230 / 1e-72 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 227 / 2e-71 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 225 / 7e-71 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 225 / 7e-71 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10023890 pacid=23160695 polypeptide=Lus10023890 locus=Lus10023890.g ID=Lus10023890.BGIv1.0 annot-version=v1.0 ATGTCTCCTGCAATGGCGATTCCGGAAGATCAGCATGAATATCAGAAAGGAGTGAAGCAGCTGTACGAGAAAGGCATTAACAGTCTTCCTAGGAAGTACA TATTGCCCGCCCAAGAACGACCGATAAACGACACGAAATTAATTAACCCTGGTGTGAAGCAGAGTAATGTCAAGCTTCCTGTTATTGACTTTGCCCAGCT CCAAGGTCCCAATCGTGCCCAGCTCCTCACCTCCCTCGCCATTGCCTGCGAGGAATACGGATTTTTCCAGGTGGTGAACCATGGGATTCCAGACAGGGTG ATAAGCGAAATGATCGATGTCGGAGGCAGATTCTTCGCACAGTCGTACGAGGAGAGGTCTAAGTACATGTCGTCGAACATGAAGGCGCCGGTCCGGTATG GAACGAGCTTTAACCAGAACAAGGACAATGTGTTCTGCTGGCGAGATTTCCTTAAGCTTGTGTGCCATCCTTTGCCTGAAATGCTTCCTCACTGGCCTTC CTCCCCTCGAGATTTTAGGAAGGTGGCGGCTACCTACGCGAAAGAGACCAAATACTTGTCCGTCATGCTTATGGAAGCCATCTTACAGAGCTTAACACGA GGGACGACAACGGCGCGGTATCTCGAAACGATGCCGTTCGGAGAAGAAGAGGAGGAGGAGGAGGTGACGAAGGAGCTATTCGAAAGCGGTAGCCAGCTAA TGGTGGTCAACTGCTACCCGCCGTGCCCTGAGCCGGATCTCACCCTCGGAATGCCGCCTCACTCCGATTACGGCTTCCTCACTTTGCTACTCCAAGACGA CGTCGCTGGCCTCCAGATTCAGCACGGCGACACGTGGCTCACCGTCGACCCCATTCCCAATGCCTTCGTCGTCAATATCGGCGACCATCTCGAGATATTT AGCAATGGGAGATACAAGAGCGTGCTACACAGAGTAGTGACGAATCAACTGAGAAACAGAATATCGGTGGCGTCTCTACACAGCTTGCCGTTCGATTACA CGGTGAGACCCTGGCTAAAGCTTATCGACAAACATAACCCTAGGCGGTATAGAGACACCGATTTCGCGACTTTTCTTCAGTACATCTCTTCCTGCGAGCC CAAGAGGAAAAATTTCCTTGAATCCAGGAAAATCAAACTATGA
AA sequence Show only first row Show all	>Lus10023890 pacid=23160695 polypeptide=Lus10023890 locus=Lus10023890.g ID=Lus10023890.BGIv1.0 annot-version=v1.0 MSPAMAIPEDQHEYQKGVKQLYEKGINSLPRKYILPAQERPINDTKLINPGVKQSNVKLPVIDFAQLQGPNRAQLLTSLAIACEEYGFFQVVNHGIPDRV ISEMIDVGGRFFAQSYEERSKYMSSNMKAPVRYGTSFNQNKDNVFCWRDFLKLVCHPLPEMLPHWPSSPRDFRKVAATYAKETKYLSVMLMEAILQSLTR GTTTARYLETMPFGEEEEEEEVTKELFESGSQLMVVNCYPPCPEPDLTLGMPPHSDYGFLTLLLQDDVAGLQIQHGDTWLTVDPIPNAFVVNIGDHLEIF SNGRYKSVLHRVVTNQLRNRISVASLHSLPFDYTVRPWLKLIDKHNPRRYRDTDFATFLQYISSCEPKRKNFLESRKIKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	0	1
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	4.1	0.8737
AT4G33590			unknown protein		Lus10001351 [exp]	9.2	0.8226
AT3G45070			P-loop containing nucleoside t...		Lus10031624 [exp]	10.2	0.8471
					Lus10004308 [exp]	11.5	0.8076
					Lus10025106 [exp]	15.2	0.7935
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	25.7	0.8296
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	33.1	0.8085
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	33.7	0.7433
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10031480 [exp]	35.6	0.6747
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10012002 [exp]	41.6	0.7654

Compare expression of checked genes

Lus10023890 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.