Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53130 845 / 0 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT1G31800 452 / 1e-152 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT4G15110 409 / 3e-136 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT2G44890 157 / 9e-42 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT2G45510 156 / 4e-41 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G26710 148 / 2e-38 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14620 141 / 5e-36 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14630 138 / 7e-35 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G23180 137 / 2e-34 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT2G21910 137 / 2e-34 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014399 [exp] 1054 / 0 AT3G53130 850 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10020380 [exp] 455 / 2e-153 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10039040 [exp] 397 / 1e-131 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10017595 [exp] 147 / 5e-38 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10033555 [exp] 143 / 1e-36 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10009232 [exp] 145 / 3e-36 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033044 [exp] 142 / 3e-36 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10038896 [exp] 142 / 5e-36 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10037999 [exp] 142 / 1e-35 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119800 [exp] 890 / 0 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.013G088100 [exp] 461 / 9e-156 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G006200 [exp] 417 / 3e-139 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.017G114200 [exp] 159 / 4e-42 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 157 / 2e-41 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.018G070900 [exp] 151 / 2e-39 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139600 [exp] 150 / 7e-39 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.014G072000 [exp] 147 / 5e-38 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.019G014407 [exp] 141 / 8e-36 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.010G139200 [exp] 135 / 6e-34 AT2G26710 369 / 6e-123 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10023891 pacid=23160712 polypeptide=Lus10023891 locus=Lus10023891.g ID=Lus10023891.BGIv1.0 annot-version=v1.0 ATGGCATTCACCGTCATAGCTTCTCCTTCCTCCATTTCTCCTTTCCTCAACACCCGCCCTCTCCACAAACTCAGCAGTAGCTCTTTCAAATCCTACCACA GCCTCACAATCAAATCCTCCTCAGACGAAAAGTCCCCTCCGAAATCCACCGCCGGAAAACAAAGCTCCTGGGTCAGCCCCGACTGGATGACATCTCTAAC TCGCTCCCTATCTTCAAAGCAAAACGATGATTCCGGCATCCCGATAGCCAGCGCGAAGTTGGAGGACGTCGGCGACCTCCTTGGCGGCGCTCTCTTCTTG CCTCTCTTCAAGTGGATGAACGAGTATGGTCCAATCTACCGCCTCGCCGCCGGTCCTAGGGACTTCGTGGTGGTTAGCGACCCCACCATTGCCAAGCATG TCTTGAGGAATTACGGCACTAAGTACTCGAAAGGACTGGTAGCTGAGGTCTCGGAGTTCCTGTTCGGATCGGGTTTCGCAATTGCTGAGGGCCAGCTTTG GACGGCGAGGAGGAGGGCGGTGGTTCCGTCGCTGCACAAGAAGTATTTGTCCGTGATTGTGGATAAGGTGTTCTGCAAATGTGCTCAGAGGATGGTGGAT CAGCTACAAGCCGATGCGTTGAGTGGAAATGGAGTGAATATGGAGGCCAAGTTTTCTCAGCTTACTCTTGATGTTATTGGTTTGTCTGTGTTTAACTATA ATTTCGACGCGTTGAATTCTGACAGTCCGGTGATTGACGCTGTTTACACTGCTTTGAAAGAAGCTGAAGCTCGTTCCACTGATCTTTTGCCCTATTGGAA GGCTAGTTTTTTTTTTTCTTGTATTTGTGTTATTAAACCTCTGTGCAAGATAATTCCGAGACAGATTAAAGCTGAGAATGCCGTCACGGTTATAAGGCAA ACTGTTGAAGAACTCATTGCGAAATGCAAAGAGATGGTTGAAAGTGAGGGTGAGAGGATTGACGGAGAGGAATATGTCAATGATGCTGATCCAAGCATTC TTCGGTTCTTGCTTGCCAGCAGAGAAGAGGTTTCGAGTGTACAATTACGAGATGATCTTCTATCAATGCTAGTTGCTGGACATGAGACTACAGGATCAGT TCTCACATGGACATTGTACCTCCTTAGTAAGGACTCTTCTGCATTGATGAAAGCACAACAGGAGGTTGATCGAGTACTGCAGGGACGACCTCCAACCTAT GAAGATGTTAAGAATTTAAAGTTTGTGAACCTCTGCATAATTGAGTCCCTGCGTCTCTATCCACATCCTCCTGTATTACTAAGGCGTGCTCAGGTTCCTG ATGTGCTTCCAGGCGATTACAAGGTCAATCCTGGTCAAGACATTATGATTTCAGTATACAATATACATCATTCCTCCAAGGTATGGGAGAGAGCAGAAGA GTTCGTCCCAGAGCGATTCGGCACAGAAGGCCCTGTACCAAACGAATCAAACACAGATTTCAAGTTCATTCCGTTCAGTGGAGGACCCCGCAAGTGCGTT GGAGACCAGTTTGCTCTACTGGAAGCCATTGTTGCCCTTACCATTTTCCTCCAGAACATGAACTTCGAGCTCGTGCCCGACCAGAAAATCAATATGACGA CCGGAGCAACAATACACACCACCAATGGACTGTACATGAAACTCAGCCAGAGGCAACCCACCCAAGCTGTAGCATCATTAGCTTCTTCAAGTTCGAAAAG CCTCGGTGAGATTAGAGATGCATACCCCTTGCATAATCGGTCCATTCATCCGATTTACGCGCGAGCAAACTCGTAA
AA sequence Show only first row Show all	>Lus10023891 pacid=23160712 polypeptide=Lus10023891 locus=Lus10023891.g ID=Lus10023891.BGIv1.0 annot-version=v1.0 MAFTVIASPSSISPFLNTRPLHKLSSSSFKSYHSLTIKSSSDEKSPPKSTAGKQSSWVSPDWMTSLTRSLSSKQNDDSGIPIASAKLEDVGDLLGGALFL PLFKWMNEYGPIYRLAAGPRDFVVVSDPTIAKHVLRNYGTKYSKGLVAEVSEFLFGSGFAIAEGQLWTARRRAVVPSLHKKYLSVIVDKVFCKCAQRMVD QLQADALSGNGVNMEAKFSQLTLDVIGLSVFNYNFDALNSDSPVIDAVYTALKEAEARSTDLLPYWKASFFFSCICVIKPLCKIIPRQIKAENAVTVIRQ TVEELIAKCKEMVESEGERIDGEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSALMKAQQEVDRVLQGRPPTY EDVKNLKFVNLCIIESLRLYPHPPVLLRRAQVPDVLPGDYKVNPGQDIMISVYNIHHSSKVWERAEEFVPERFGTEGPVPNESNTDFKFIPFSGGPRKCV GDQFALLEAIVALTIFLQNMNFELVPDQKINMTTGATIHTTNGLYMKLSQRQPTQAVASLASSSSKSLGEIRDAYPLHNRSIHPIYARANS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	0	1
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	2.0	0.9554
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	2.0	0.9396
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	2.4	0.9495
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	3.0	0.9220
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10040841 [exp]	3.9	0.9402
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10019508 [exp]	5.7	0.9241
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	6.2	0.8916
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10027809 [exp]	6.3	0.9092
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	7.9	0.9273
AT3G08010		ATAB2	RNA binding (.1)		Lus10029507 [exp]	8.1	0.9336

Compare expression of checked genes

Lus10023891 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.