Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53140 559 / 0 O-methyltransferase family protein (.1) AT5G54160 243 / 1e-77 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 205 / 4e-63 O-methyltransferase family protein (.1.2) AT1G77520 199 / 2e-60 O-methyltransferase family protein (.1) AT1G33030 196 / 8e-60 O-methyltransferase family protein (.1) AT1G77530 171 / 7e-50 O-methyltransferase family protein (.1) AT1G63140 169 / 6e-49 O-methyltransferase family protein (.1.2) AT5G53810 169 / 7e-49 O-methyltransferase family protein (.1) AT1G76790 160 / 6e-46 IGMT5 indole glucosinolate O-methyltransferase 5, O-methyltransferase family protein (.1) AT1G21130 160 / 1e-45 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014400 [exp] 714 / 0 AT3G53140 562 / 0.0 O-methyltransferase family protein (.1) Lus10032929 [exp] 247 / 3e-79 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 239 / 3e-76 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 204 / 9e-63 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10002667 [exp] 202 / 5e-62 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10009442 [exp] 202 / 8e-62 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10006146 [exp] 199 / 7e-61 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002669 [exp] 198 / 2e-60 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014825 [exp] 157 / 7e-45 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120000 [exp] 597 / 0 AT3G53140 575 / 0.0 O-methyltransferase family protein (.1) Potri.012G006400 [exp] 246 / 9e-79 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 237 / 1e-75 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 237 / 2e-75 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 236 / 3e-75 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 236 / 4e-75 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 236 / 4e-75 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 230 / 5e-73 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 230 / 1e-72 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 220 / 8e-69 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10023892 pacid=23160824 polypeptide=Lus10023892 locus=Lus10023892.g ID=Lus10023892.BGIv1.0 annot-version=v1.0 ATGGCAGACGAGATATCAGAAAGCCGGAAAACAGCCAGGCTTGCGATATTCGAGCTGGCAAACATGATCAGCGTCCCTATGTCGCTGAACGCCGTTGTGC GGCTCAACGTCGCCGACGCACTCTGGCAAGGCGGATCCAACTCCCCTCTCACCGCCGCTGAGATCCTCTCCCGTCTTCCCTCCTCGACTTCCGCCTCCGA TTCGGAGAACCTCCAGCGCATCCTCCGTTTGCTCTCTTCGTATGGCGTATTCGACGAGCATATTGTAGGCGGCGGCGGCGGCGGCGAGAGGAAATACTCG CTGACTGAGATCGGTAAAACGCTCGTCACGGATTCCGATGGACTCTCATATGGGCCTTACGTTCTCCAACATCACCAGGACGCACTGATGAGAGCGTGGC CATTGGTCCACGAGGCGGTGATGGACTCCACGACGGAGCCGTTCGTGAAGGCGAACGGAGAGCCGGCGTACGACCACTACGGGAAGCAGCCGGAGATGAA CGAGCTGATGCTTAAGGCAATGTCCGGAGTATCCGTGCCGTTCATGAAATCAATGCTGGAGGGTTACAGAGGATTTGACGGCGTTAAGAGATTGGTTGAC GTCGGCGGGAGTGCAGGGGATTGCCTGCGGATGATCCTGCACAAGTTCCCCTGCGTTGAAGAAGGGATCAACTTCGATTTGCCCGAAGTTGTTGCCAAAG CCCCCACCATTCAAGGAATGAAGCACGTGGGTGGCGACATGTTCAAGTCCATACCTAGCGCCGATGCCATCTTCATGAAGTGGATCCTGACGACATGGAC GGACGAGGAATGCAAGGCGATAATGAAGAACTGTTACAATGCGCTTCCACAAGGAGGAAAGCTGATAGCGTGCGAGCCGGTGCTGCCTAACGACTCTGAC AACAGTCACCGGACTCGAGCTCTTCTCGAAGGCGACATATTCGTGATGACCATCTACAGGGCCAAGGGGAAGCACAGGACTGAAGAGGAGTTCAGGCAGC TTGGTCTGGCCGTTGGTTTCTCGGAGTTGAAGGCTTCGTATTCCGTGGATTACTTCTACTCTGTGTTGGAGTTCCAAAAATAG
AA sequence Show only first row Show all	>Lus10023892 pacid=23160824 polypeptide=Lus10023892 locus=Lus10023892.g ID=Lus10023892.BGIv1.0 annot-version=v1.0 MADEISESRKTARLAIFELANMISVPMSLNAVVRLNVADALWQGGSNSPLTAAEILSRLPSSTSASDSENLQRILRLLSSYGVFDEHIVGGGGGGERKYS LTEIGKTLVTDSDGLSYGPYVLQHHQDALMRAWPLVHEAVMDSTTEPFVKANGEPAYDHYGKQPEMNELMLKAMSGVSVPFMKSMLEGYRGFDGVKRLVD VGGSAGDCLRMILHKFPCVEEGINFDLPEVVAKAPTIQGMKHVGGDMFKSIPSADAIFMKWILTTWTDEECKAIMKNCYNALPQGGKLIACEPVLPNDSD NSHRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLAVGFSELKASYSVDYFYSVLEFQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53140			O-methyltransferase family pro...		Lus10023892 [exp]	0	1
AT5G57850			D-aminoacid aminotransferase-l...		Lus10006441 [exp]	1.4	0.9557
AT5G49960			unknown protein		Lus10035805 [exp]	2.0	0.9441
					Lus10025501 [exp]	2.4	0.9432
AT2G34070		TBL37	TRICHOME BIREFRINGENCE-LIKE 37...		Lus10015309 [exp]	3.2	0.9411
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Lus10026430 [exp]	4.7	0.9220
AT1G71740			unknown protein		Lus10042773 [exp]	4.9	0.9418
AT3G04570	AT-hook	AHL19	AT-hook motif nuclear-localize...		Lus10006577 [exp]	4.9	0.9373
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041223 [exp]	6.0	0.9103
AT5G16340			AMP-dependent synthetase and l...		Lus10013772 [exp]	6.9	0.9259
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10006117 [exp]	8.1	0.8930

Compare expression of checked genes

Lus10023892 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.