Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 494 / 2e-172 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 493 / 5e-172 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 480 / 1e-166 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36790 468 / 3e-162 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 464 / 1e-160 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36760 464 / 2e-160 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT3G53150 441 / 2e-151 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15490 362 / 1e-120 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 360 / 8e-120 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014403 [exp] 917 / 0 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 572 / 0 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 571 / 0 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10016268 [exp] 479 / 2e-166 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 470 / 2e-162 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10014437 [exp] 461 / 6e-159 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 453 / 2e-156 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 443 / 3e-152 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10014402 [exp] 443 / 5e-152 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 524 / 0 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 481 / 3e-167 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 471 / 1e-162 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302300 [exp] 407 / 2e-138 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 399 / 2e-135 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 395 / 1e-133 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098400 [exp] 392 / 2e-132 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G302400 [exp] 390 / 1e-131 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 389 / 4e-131 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 387 / 2e-130 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10023893 pacid=23160817 polypeptide=Lus10023893 locus=Lus10023893.g ID=Lus10023893.BGIv1.0 annot-version=v1.0 ATGGCCCTTCATTTTGTGTTGACTCCCTTTATGGCACAAGGCCATTTGATTCCCATGATCGACATAGCCAAACTCTTGGCTCAACACGGTGTCGCGGTGA CCGTGATCACTACACCGGTCAACGCGGACAGGGTCCGATCAACGCTCACACGTGCCATCGAACTATCGGGTGCCCAAATAAGTGTAAAGGAAGTTGACTT TCCATGGAAAGAAGTTGGACTGCCTAAAAGTTGTGAAAATTTGGACCAACTGCCTTCGTTGGGCCTGGCGGGGAGTTTCATGGACAAGGGAGATGAATTG CTTCAACGGGCCGTTGAGAAGATATTTGAGGAGCTTAGGCCCAAGCCCAACTGCATAATATCCGACATGTCTTTCCCTTACACTAGCTTCCTAGCTCAAA AGCATGGCATTCCTAGAATTAGCTTTAATGGGTTCTCATCCTTTTCCTGGTTGTGCATTTCCAACATGTGGATTAGTATCAAGGAAGGGTTCCTCGACGG GGTGGCTTCCGATTGCGAACCGTTTCTGGTGCCAGGGATGCCACATCCGGTCGAGTTGACGAATGATAAGTTACCCTTCGACATGATTAAAGGGATGGAC CAGTTTAACCAAAGATCTGAAGCTGCTGAGGCCTTATCTTACGGTACGATTTTCAACTCGTTTGAAGAGTTGGAGCATGAGTACTTATCGGTTTTTAAAG GAACAATGGGGCAGAAAGCATGGTGTGTCGGCCCGGTCTCTTTGTGCAACGAGGAAAAAATGGATCGGTTTCATAGGGGTAATAAAAATTCAACTGATGG GTCAAAATGCTTGAAGTGGCTCAACTCGCAAGAGTCCTGTTCGGTTGTTTACATATGCTTGGGAAGCATATGTAACATCTCGACTTCACAGCTAATCGAG CTCGGGTTGGGGTTGGAAGCATCGGGACGAACTTTTATATGGGCGATAAGGGATGGTGAGGCCTCCAACGGACTGCTGGAATGGATGGAAGATCACGACT TTGATGAGAGGATCAAAGACCGAGGGTTCGTGATCCGTGGGTGGGCACCACAAGTGGCTATTCTTTCCCACTCTGCTATCGGTGGGTTCTTGACGCATTG TGGGTGGAATTCCACGCTGGAAGGGATATGCGCTGGCGTGACAATGCTAACATGGCCGCTGTTTGCGGAGCAATTTTGCAATGAGAGGCTAGTGGTGGAT GTGTTGAAGATTGGAGTGGAAATTGGAGCAAAACGTAAGGTGAATTGGGGAGAGGAGGAGAAGAATGTTGGGGCAGTGGTGAAGAAAGAAGATATTGTGA AAGGTATAGAAGAATTGATGGGGGGAGGAGATGAAAGGTATAAGAGAAAGATTAGGGTTAAAGAGCTTAGTGAAGTGGCCAAACTAGCTCTCAAACCCGG AGGGTCTTCATACATGAACATCGAGATGTTAATTGAAGATATATCTCGTTATGAAGTGGGTTTTTAG
AA sequence Show only first row Show all	>Lus10023893 pacid=23160817 polypeptide=Lus10023893 locus=Lus10023893.g ID=Lus10023893.BGIv1.0 annot-version=v1.0 MALHFVLTPFMAQGHLIPMIDIAKLLAQHGVAVTVITTPVNADRVRSTLTRAIELSGAQISVKEVDFPWKEVGLPKSCENLDQLPSLGLAGSFMDKGDEL LQRAVEKIFEELRPKPNCIISDMSFPYTSFLAQKHGIPRISFNGFSSFSWLCISNMWISIKEGFLDGVASDCEPFLVPGMPHPVELTNDKLPFDMIKGMD QFNQRSEAAEALSYGTIFNSFEELEHEYLSVFKGTMGQKAWCVGPVSLCNEEKMDRFHRGNKNSTDGSKCLKWLNSQESCSVVYICLGSICNISTSQLIE LGLGLEASGRTFIWAIRDGEASNGLLEWMEDHDFDERIKDRGFVIRGWAPQVAILSHSAIGGFLTHCGWNSTLEGICAGVTMLTWPLFAEQFCNERLVVD VLKIGVEIGAKRKVNWGEEEKNVGAVVKKEDIVKGIEELMGGGDERYKRKIRVKELSEVAKLALKPGGSSYMNIEMLIEDISRYEVGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10023893 [exp]	0	1
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	2.0	1.0000
					Lus10000824 [exp]	2.8	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	4.0	1.0000
					Lus10003272 [exp]	4.6	1.0000
					Lus10011629 [exp]	4.9	1.0000
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	5.7	1.0000
					Lus10010826 [exp]	5.9	1.0000
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10025682 [exp]	6.0	1.0000
					Lus10029832 [exp]	6.6	1.0000
					Lus10022108 [exp]	7.0	1.0000

Compare expression of checked genes

Lus10023893 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.