Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36810 2275 / 0 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014405 [exp] 2825 / 0 AT2G36810 2370 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120800 [exp] 2479 / 0 AT2G36810 2559 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023895 pacid=23160788 polypeptide=Lus10023895 locus=Lus10023895.g ID=Lus10023895.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCGAGCTCCGGAAGCTCAATTCCCGCGCCAGAGGCAGTTCAGGTTCTGGTCTCCTCGCTCGCTGATGAATCGCCGATGGTCAGAAAAGCCG CCATGGTTTCTCTCAAGGATATTGCCATTCTGAATCCGCTTCTCGTTCTTGATTGTTGCTCTGCGGTGTCTCGTGGTGGACGAAGACGATATGGGAACAT TGCTGGACTGTTTCAAGTAATGGCAATGGGAGTTGGAGCGTTGGAGAAAGACGATGTTGATCCTTCTGTCATGGCCAAGCTTGCGAAGATTGCCACTGCG GAGATTATCTCTTCTAAGGAAGTCAACACAGATTGGCAGAGGGCTGCTGCTAGCTTACTTGTTGCTATAGGATGCCATCTACCTGATCTGATGATGGAGG AGATTTTTCTTCATTTGTCTGGACCTAGTTCAGCTCTGCCTGCTATGGTGCAAATACTTGCAGATTTTGCTACCGCTGATGCCTTGCAGTTCATTCCAAG ATTAAAAGCTGTCCTTTCTCGAATTTTACCCCTTCTTGGAAATGTACGAGATGTCCATCGGTCAATCTTTGCAAATGCATTTAAATGCTGGTGCCAGGCT GCTTGGCTGTATCGTGCTGATTTCCCATTGAATTCCTTTCTTGACAGTGATGTCATGTCGTTCCTAAATTCTGGCTTTGAGCTTCTATTGAGAGTTTGGG CAACTTCACGTGATCTTAAGGTCCGTGCATCTTCGGTGGAAGCATTGGGTCAATTGGTTGGCCTTATAACTCGTACACAACTGAAGGCAGCTTTGCCCAG ACTTGTCCCCACCATGTTAGAATTGTGCAAAAAGGATCAGGATATTGCTCTTCTGGCTACGATTTCTCTTCACAATCTTCTGGATGCAGCTTTATTATCA GAGACTGGTCCGCCAATGCTTGATTTTGAGGACCTCGTGGTAATTCTATCAACTCTTCTCCCAGCAGTTTGCGTCTACGATGACAGAAAAGGGCATTCGG ATTTTTCATTGGGACTTAAGACCTATAATGAAGTTCAGCACTGCTTTATGATCATCGGTATGGTGTACCCTGATGATCTGTTTACATTCCTTTTAAATAA ATGCCGGTTGAAGGAAGAATCTTCGACTTTTGGGGCAATATGTGTATTAAAGCACCTTCTCCCCAGGTCATCTGAAGCTTGGCATAGTAAAAGGCCTTTA CTTGTTGAAGTTGTCAAGGCTTTGCTAGATGAGCAAAACTTGTGTGTCCGAAAGGCTGTGTCTGAGTTGATCGTGGTCATGGCCTCTCATTGCTATTTTG TTGGGCCTTCTGGAGAAATATTTGTTGAATACCTGGTGCGCCATTGTGCTCTATCAGACAATGAAAGAAATGATCCTGGGAAATCTATGATGAAGATAGG ATTTTTTAGCGTAGGAGAATTGAGGGCAGTGTGTGAGAAAGGCCTTCTTCTGTTAACAATTACAATTCCTGAGATGGAGCATATTCTTTGGCCTTTTCTG TTGAAGATGATTGTTCCACGAATTTATACTGGTGCAGTAGCTACGGTCTGCCGATGTATCTCAGAAATGTGTAGACAGAGATCTTCTAACAGTAACAACA TACTGGGTGAATGCAAAACTCGGTCTGATATACCTATCCCGGAGGAGCTTTTGGCTCGTCTGTTGGTGCTTTTGCACAATCCCCTGGCTCCGTCACAATC AGCAACTCAGATTTTGAGTATTCCCAAAATGAAGGCCTATGTTAGTGACACAGACGATTTAAAGCTGGATCCTTCATACCAAGAGACATGGGATGACATG ATAATCAATTTTCTTGCAGAATCCTTAGATGTAATTGAAGATAACGACTGGGTGATATCTCTAGGAAATGCTTTTACAAACCAATATGAGCTGTATGCAC CAGAGGATGAACATTCTGGCCTGCTTCATCGGTGCCTCGGCATGCTTTTGCAAAAAGTGGATGACAAAGGCTATGTCCAGGACAAGATCAATTGGATGTA CAAACAAGCTGACATTGCTATTCCAACCAACAGACTTGGTTTAGCAAAAGCCATGGGACTGGTTGCTGCATCTCACTTGGACACTGTTTTGGAAAAGCTG AAAGACATTCTGGTAAATGTTGGCCAAACCATTTTCCAGAGATTATTGTCGTTATTCTCTGAGAATTATAAAACAGAGGATTCAGATGACATACATGCCG CGTTGGCTCTGATGTATGGGTATGCTGCAAGATATGCTCCATCCACAGTTATTGAAGCCAGGATAGATGCACTTGTTGGGACCAATATGCTCTCAGAGCT TCTTCATGTGCGCCATCCTACTGCAAAGCAGGCTGTAATTACTGCTATTGACTTGTTAGGTTGTGCTGTCATCAATGCTTCTGAAAGCGGAGCACCGTTC CCACTGAAAAAAAGAGATGTCCTGCTGGACTACATATTAACCCTGATGGGAAGAGATGATGATGAAGATTTTTCTGATTCCAGTCTTGAGCTTCTGCGAA CTCAGGCATCGGCTTTAAGCGCTTGTACCACTTTGGTTTCGGTGGAGCCGAAACTGACAATAGAAACAAGAAACCTGGTTTTGAAGGCAACCTTAGGATT TTTTGCTGTACCCAATGAGCCAGAAGATGTTGTCAAATCCCTTATAGACAACCTAATCACTCTGTTATGTGCAATTCTCCTTACAAGTGGAGAGGATGGA AGAAGTCGGTCAGAGCAGCTATTGCATATTTTGAGACATATTGATCATTATGTTACTTCAGCGGTTGATTATCAGAGGAAAAGAGGTTGTCTTGCTGTGC ACGAGATGCTTCTCAAATTCCGTATGCTTTGTGTCAGTGGATCTTGTGCATTTGGCTGCCATGGAACATGCTCACATGGCAAGCAATTGGACCATACTAT GCGGGGTAACTTTCCCAACTTACCATCTGCTTTCGTAATGCCAAGCCGTGAAGCCCTTTCTTTGGGAGAGAGGGTCATTGTTTATCTACCTCGTTGTGCA GACACTAGTTCTGAAGTTCGAAAAGTTGCTGCTCAGATTCTTGATCAACTCTTCAGCATTGCTCTCTCTCTTCCAAAACCGCTTGGATCGATCACTAGTG TGGATATGGAATTATCTTATCAGTCCTTATACTCACTTGAGGATGTTATAGCCATTTTGAGAAGGGATGCTTCCATTGACCCATCAGAGGTTTTCAACCG AATCGTTTCGTCTGTTGGTGTTTTATTGACAAAGGATGAGCTTGTTGGAACCTTGTATGGTTCTGCAGCAGGTATATGCGACAAGATCAAGCCATCAGCT GAAGGAACCATAGAAGCTGTTATCGAGTTTGTTACTAAGAGGGGAATTGAACTAAACAATGCTGATCTTTCAAGAACAACGCAGTCGCTGCTCTCTGCTG CAATACATGTAACTGAGAAACATCTAAGATTGGAGACTATTGGAGCTATTTCTTCACTTGCTGAAAGTACCAGTTCGAAAATCGTCTTCAATGAAGTACT GGCAACTGCTGGAAAAGATATCATTACCAAGGACATATCTAGGTTACGAGGTGGCTGGCCAATGCAGGATGCCTTTTATACGGAGGATCAAATTCTTCAG GCTTCTATGTTCGCTCTGACTGCCTTTTTTAGAGGTGGAGGTAAAGTCGGAAAGAAGGCTGTCGAGCAAAGTTATGCTTCCGTTCTCGCTGGACTTACAC TCCAATTTGGAAGTTGTCATGGTCTTGCTAGTTTTGGCCAGCGTGAGCCATTACAATATCTTCTAGCAGCATTTCATGCCTTTTGTGAATGTGTCGGAGA CCTTGAGATGGGAAAGATACTTGCTAGAGACGGAGAACTAAACGAAAATGAGAAGTGGATCGCTGTAATTGGAGATATAGCTGACTGCATTTCTATAAAG AGACCAAAAGAGGTTCAAACTATTTGCTTAAGTCTAACAAAATCGTTGAATCGGCAACAAAGATTTCAAAGAGAAGCTGCAGCTGCTGCATTGTCTGAGT TTGTTCGATACAGTGGAGAATTTGGGGCTGTTTTGGAGGAAATAGTCGAGGCATTGTGTCGACATGTGTCAGATGAGTCTCCAACTGTTAGACGCCTTTG TTTAAGAGGTCTTGTCCAGATCCCACCTGTTCATATCTCTCAGTACACAACTCAAATATTGGGTGTAATAGTGGCATTGATGGATGATGCTGATGAATCT GTTCAATCAACTGCTGTTTCTTGTTTGCTCACGATTCTTGACTCCTCGCCCAACGATGCAGTGGAGCCTATTTTGCTTAATCTTTCTGTCAGACTGCGGA ATCTTCAAGTATCCATGAACCCGAAGATGCGAGCTAATGCATTTGCAGCCTTTGGATCTCTGAGCACTTTTGGCGTCGGAGAGCAGCGTGATGCGTTTGT TGAGCAGGTACACGCTGCATTTCCCCGCTTGATTCTGCACCTTCATGACGATGATCTTAGGGTCCGACAGGCCTGCCGAAACACCCTCAAACGAATCGCT CCATTGACGGAGATGGAAGGATCATTTGTCCAACATCTCCCGTCAAGAGTTGACACCTACATGGCACTCGCCATACAGGCTTTTGATTCGACGTGGCCTG TGATCCAAGCGAACGCCATTTACTTGGTCAGCAGCTTCCTATCAGTTTCAGATGATCAGCGGACATTAGCACTTTACTACTCGCAGGTGTTTGGAATGCT GGTAGGCAAGATGAGCCGATCACCAGATGCAGTAGTGAGGGCAAGATGCTCCTCGGCACTCGGCCTCTTACTCAAATCATCCAATTCACTATCGTGGAGA TCATCCCGGCTCGACAGAAGGCCTAGCGACTGA
AA sequence Show only first row Show all	>Lus10023895 pacid=23160788 polypeptide=Lus10023895 locus=Lus10023895.g ID=Lus10023895.BGIv1.0 annot-version=v1.0 MASSSSGSSIPAPEAVQVLVSSLADESPMVRKAAMVSLKDIAILNPLLVLDCCSAVSRGGRRRYGNIAGLFQVMAMGVGALEKDDVDPSVMAKLAKIATA EIISSKEVNTDWQRAAASLLVAIGCHLPDLMMEEIFLHLSGPSSALPAMVQILADFATADALQFIPRLKAVLSRILPLLGNVRDVHRSIFANAFKCWCQA AWLYRADFPLNSFLDSDVMSFLNSGFELLLRVWATSRDLKVRASSVEALGQLVGLITRTQLKAALPRLVPTMLELCKKDQDIALLATISLHNLLDAALLS ETGPPMLDFEDLVVILSTLLPAVCVYDDRKGHSDFSLGLKTYNEVQHCFMIIGMVYPDDLFTFLLNKCRLKEESSTFGAICVLKHLLPRSSEAWHSKRPL LVEVVKALLDEQNLCVRKAVSELIVVMASHCYFVGPSGEIFVEYLVRHCALSDNERNDPGKSMMKIGFFSVGELRAVCEKGLLLLTITIPEMEHILWPFL LKMIVPRIYTGAVATVCRCISEMCRQRSSNSNNILGECKTRSDIPIPEELLARLLVLLHNPLAPSQSATQILSIPKMKAYVSDTDDLKLDPSYQETWDDM IINFLAESLDVIEDNDWVISLGNAFTNQYELYAPEDEHSGLLHRCLGMLLQKVDDKGYVQDKINWMYKQADIAIPTNRLGLAKAMGLVAASHLDTVLEKL KDILVNVGQTIFQRLLSLFSENYKTEDSDDIHAALALMYGYAARYAPSTVIEARIDALVGTNMLSELLHVRHPTAKQAVITAIDLLGCAVINASESGAPF PLKKRDVLLDYILTLMGRDDDEDFSDSSLELLRTQASALSACTTLVSVEPKLTIETRNLVLKATLGFFAVPNEPEDVVKSLIDNLITLLCAILLTSGEDG RSRSEQLLHILRHIDHYVTSAVDYQRKRGCLAVHEMLLKFRMLCVSGSCAFGCHGTCSHGKQLDHTMRGNFPNLPSAFVMPSREALSLGERVIVYLPRCA DTSSEVRKVAAQILDQLFSIALSLPKPLGSITSVDMELSYQSLYSLEDVIAILRRDASIDPSEVFNRIVSSVGVLLTKDELVGTLYGSAAGICDKIKPSA EGTIEAVIEFVTKRGIELNNADLSRTTQSLLSAAIHVTEKHLRLETIGAISSLAESTSSKIVFNEVLATAGKDIITKDISRLRGGWPMQDAFYTEDQILQ ASMFALTAFFRGGGKVGKKAVEQSYASVLAGLTLQFGSCHGLASFGQREPLQYLLAAFHAFCECVGDLEMGKILARDGELNENEKWIAVIGDIADCISIK RPKEVQTICLSLTKSLNRQQRFQREAAAAALSEFVRYSGEFGAVLEEIVEALCRHVSDESPTVRRLCLRGLVQIPPVHISQYTTQILGVIVALMDDADES VQSTAVSCLLTILDSSPNDAVEPILLNLSVRLRNLQVSMNPKMRANAFAAFGSLSTFGVGEQRDAFVEQVHAAFPRLILHLHDDDLRVRQACRNTLKRIA PLTEMEGSFVQHLPSRVDTYMALAIQAFDSTWPVIQANAIYLVSSFLSVSDDQRTLALYYSQVFGMLVGKMSRSPDAVVRARCSSALGLLLKSSNSLSWR SSRLDRRPSD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36810			ARM repeat superfamily protein...		Lus10023895 [exp]	0	1
AT2G36810			ARM repeat superfamily protein...		Lus10014405 [exp]	1.0	0.9838
AT2G43020		ATPAO2	polyamine oxidase 2 (.1)		Lus10020726 [exp]	7.3	0.8507
AT4G24810			Protein kinase superfamily pro...		Lus10032628 [exp]	8.0	0.7980
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	13.0	0.8271
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	14.1	0.8258
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028875 [exp]	14.8	0.8245
AT5G51820		STF1, PGM1, ATP...	STARCH-FREE 1, ARABIDOPSIS THA...		Lus10027400 [exp]	15.3	0.8214
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	16.7	0.8211
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	18.1	0.7821
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	18.3	0.8183

Compare expression of checked genes

Lus10023895 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.