Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20030 266 / 2e-89 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 266 / 5e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 253 / 7e-85 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 254 / 9e-85 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G38670 252 / 3e-84 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT4G38660 241 / 5e-79 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 223 / 2e-73 ATLP-3 thaumatin-like protein 3 (.1) AT4G24180 221 / 3e-72 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G75040 220 / 3e-72 PR-5, PR5 pathogenesis-related gene 5 (.1) AT5G38280 232 / 4e-72 PR5K PR5-like receptor kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004410 [exp] 283 / 6e-97 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028448 [exp] 269 / 1e-90 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 268 / 1e-89 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 265 / 8e-89 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 261 / 4e-87 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10041901 [exp] 260 / 4e-87 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 233 / 9e-76 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10028447 [exp] 232 / 2e-75 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10036435 [exp] 240 / 5e-74 AT4G38670 417 / 7e-139 Pathogenesis-related thaumatin superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G222100 [exp] 306 / 6e-106 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 306 / 6e-106 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 303 / 7e-105 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 303 / 2e-104 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 301 / 6e-104 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 300 / 2e-103 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221800 [exp] 300 / 2e-103 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 298 / 1e-102 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221200 [exp] 291 / 5e-100 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G220900 [exp] 276 / 3e-94 AT1G20030 251 / 2e-83 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10023897 pacid=23160797 polypeptide=Lus10023897 locus=Lus10023897.g ID=Lus10023897.BGIv1.0 annot-version=v1.0 ATGTCTTGCCTCGCAGCCCTCCTCGTCGCCGTGTTCCTCGTCGCCGGATTAGCTGAATCCGCGACGCTAAACTTCACAAACAACTGCAAGTACACAGTAT GGCCGGGGACACTCACAGGCGGCGGCGCCCCACAGCTGTCCACCACCGGGTTCGAGCTGTCCCCGGGCGCGTTTTCCCTCCTCGACGTCCCTGGTAACTG GAGCAGCGGCCGTCTCTGGGGCCGAACCGGCTGCTCCACCGACTCGGCTGGAAAACTCACCTGCCTCACCGGCGACTGCGCCTCCGGCGAGGTCGAATGC GCCGGAGCCGGCGCGATCCCGCCTGCCACCCTTGTGGAGTTCACCCTTGACGGAGCGGGTGGGCTTGACTTCTACGACGTCAGCCTAGTCGACGGGTTCA ACCTGCCGGTCGGGATTGCTCCGATTGGCGGCGGGTGTAACGCCACGAGCTGCTCGGCCGATGTCAACGGAGCTTGTCCGTCGGAGCTGGCCGTGAGGGG TCCCGATGCAAGGGCGGTGGGTTGTGAGAGCGCGTGTTTGGCGCTGAACAAGCCGGAGTATTGCTGCAGTGGGGAGTATAATACGCCGGGGAAGTGCCCG CCGACCAAGTATGCGAGGTTTTTTAAGGATCTTTGCCCTCAGGCTTATAGCTATGCTTACGATGATGGGACGAGTACGTTCACTTGTCCTACTGGCAAGA ATTACTTGATCACGTTTTGTCCTTAG
AA sequence Show only first row Show all	>Lus10023897 pacid=23160797 polypeptide=Lus10023897 locus=Lus10023897.g ID=Lus10023897.BGIv1.0 annot-version=v1.0 MSCLAALLVAVFLVAGLAESATLNFTNNCKYTVWPGTLTGGGAPQLSTTGFELSPGAFSLLDVPGNWSSGRLWGRTGCSTDSAGKLTCLTGDCASGEVEC AGAGAIPPATLVEFTLDGAGGLDFYDVSLVDGFNLPVGIAPIGGGCNATSCSADVNGACPSELAVRGPDARAVGCESACLALNKPEYCCSGEYNTPGKCP PTKYARFFKDLCPQAYSYAYDDGTSTFTCPTGKNYLITFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G75800			Pathogenesis-related thaumatin...		Lus10023897 [exp]	0	1
					Lus10021894 [exp]	1.0	0.9701
AT3G54200			Late embryogenesis abundant (L...		Lus10003238 [exp]	2.4	0.9361
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Lus10002691 [exp]	3.5	0.9251
AT5G62470	MYB	ATMYB96, mybcov...	myb domain protein 96 (.1.2)		Lus10002056 [exp]	5.0	0.9182
					Lus10024103 [exp]	5.1	0.8616
AT3G57030			Calcium-dependent phosphotries...		Lus10019148 [exp]	6.0	0.9199
AT1G71680			Transmembrane amino acid trans...		Lus10037052 [exp]	6.0	0.8787
					Lus10018224 [exp]	7.7	0.8932
					Lus10007554 [exp]	9.2	0.8898
					Lus10011452 [exp]	9.4	0.8872

Compare expression of checked genes

Lus10023897 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.