Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38670 100 / 4e-26 Pathogenesis-related thaumatin superfamily protein (.1.2.3) AT2G17860 97 / 6e-25 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75800 98 / 1e-24 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36010 97 / 2e-24 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75040 95 / 3e-24 PR-5, PR5 pathogenesis-related gene 5 (.1) AT1G75050 94 / 9e-24 Pathogenesis-related thaumatin superfamily protein (.1) AT1G20030 90 / 6e-22 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75030 88 / 3e-21 ATLP-3 thaumatin-like protein 3 (.1) AT4G36000 85 / 2e-20 Pathogenesis-related thaumatin superfamily protein (.1) AT4G38660 86 / 6e-20 Pathogenesis-related thaumatin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023898 [exp] 211 / 4e-69 AT1G20030 164 / 2e-49 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10023897 [exp] 116 / 2e-32 AT1G75800 271 / 8e-91 Pathogenesis-related thaumatin superfamily protein (.1) Lus10004410 [exp] 110 / 6e-30 AT1G20030 252 / 1e-83 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10032726 [exp] 100 / 4e-26 AT1G75030 334 / 5e-117 thaumatin-like protein 3 (.1) Lus10028448 [exp] 99 / 3e-25 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10037483 [exp] 94 / 6e-23 AT1G75030 242 / 3e-79 thaumatin-like protein 3 (.1) Lus10041901 [exp] 93 / 6e-23 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017265 [exp] 91 / 7e-22 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10015705 [exp] 89 / 2e-21 AT1G75030 256 / 6e-86 thaumatin-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G221800 [exp] 115 / 5e-32 AT1G75800 272 / 2e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G284305 [exp] 115 / 5e-32 AT1G75800 270 / 3e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221900 [exp] 114 / 2e-31 AT1G75800 271 / 5e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221100 [exp] 111 / 2e-30 AT1G75800 277 / 2e-93 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G222100 [exp] 111 / 2e-30 AT1G75800 283 / 2e-95 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221700 [exp] 111 / 2e-30 AT1G75800 273 / 1e-91 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221200 [exp] 110 / 9e-30 AT1G75800 254 / 2e-84 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221500 [exp] 109 / 1e-29 AT1G75800 269 / 6e-90 Pathogenesis-related thaumatin superfamily protein (.1) Potri.001G221400 [exp] 102 / 6e-27 AT1G75800 260 / 1e-86 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 100 / 9e-26 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF00314 [flax] [poplar] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Lus10023899 pacid=23160803 polypeptide=Lus10023899 locus=Lus10023899.g ID=Lus10023899.BGIv1.0 annot-version=v1.0 ATGGACGGGTTTGGGGTCGAACGAATTGCGAATCCGACGACCTCGGTGAGACCACAATTTTTAAGTGCTTTACCGGGGACTGTGGTATTTTTTTCGGAGG ATTGCACCGACTTCGAACCAAAACGACCTGTAACCTTCATGAATTTCACACTGAACGGCCCTGGCGGGGTTGACTCCTACGTTGTAAGCTACGCCGAGGG GTTCAACCTCCCGGTCTCCATTACACCATTCGTCCAAGGAACAGGGATAAGCTTCACTCCGCCAATCGGGAATTGCAGTGTGATAAGTTGCACAAAGAGC CTAAACAAAGTATGTCCGCCACGGCTGCGGTTGAAGAACGACAGAGAGCGCGTGCTTGGGTGCAACAGCCCGTGCGTTGCCTATAACACGATCGTGGACT GCTGCCCGGATCCAAACCAAGTGTGCCTCCCGAGCGATGAAAGGATTCTCTTCACGCACATCTGCCCTCAGGCTCACGTCTACCCCTTTGATGTTAATGC CACCACCTTCACTTGCCCTGCTGGCAAGGATTACTTGATCACTTTCTGTCCATGA
AA sequence Show only first row Show all	>Lus10023899 pacid=23160803 polypeptide=Lus10023899 locus=Lus10023899.g ID=Lus10023899.BGIv1.0 annot-version=v1.0 MDGFGVERIANPTTSVRPQFLSALPGTVVFFSEDCTDFEPKRPVTFMNFTLNGPGGVDSYVVSYAEGFNLPVSITPFVQGTGISFTPPIGNCSVISCTKS LNKVCPPRLRLKNDRERVLGCNSPCVAYNTIVDCCPDPNQVCLPSDERILFTHICPQAHVYPFDVNATTFTCPAGKDYLITFCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38670			Pathogenesis-related thaumatin...		Lus10023899 [exp]	0	1

Compare expression of checked genes

Lus10023899 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.