Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 1090 / 0 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014407 [exp] 650 / 0 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023905 [exp] 535 / 0 AT3G53180 403 / 2e-134 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023904 [exp] 376 / 3e-123 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10024005 [exp] 321 / 2e-101 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023906 [exp] 199 / 2e-59 AT3G53180 199 / 2e-60 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023907 [exp] 99 / 1e-24 AT3G53180 112 / 5e-30 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10033799 [exp] 92 / 6e-22 AT3G53180 104 / 2e-27 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023908 [exp] 0 / 1 AT3G53180 115 / 5e-31 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 1209 / 0 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF04909 [flax] [poplar] Amidohydro_2 Amidohydrolase CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023900 pacid=23160744 polypeptide=Lus10023900 locus=Lus10023900.g ID=Lus10023900.BGIv1.0 annot-version=v1.0 ATGGAGTTCAAGGATTTGAGAGAAGCGATAGAGAAGGTGCAGCTGGTCGACGGACACGCACACAACATCGTCTCGTTCGATTCCTCCTTTCCTTTTATCA ATGGCTTCTCCGAAGCCACCGGCGAGGCCGCCTCCTTCTCTTCTCATTCTCTTTCCTTCAAGAGAAATTTGAGGGAAATTGCGGAGTTGTATGGATGTGG AAACTCCTTGCAAGCCGTGGAAGAGCATCGCAGGTCTTCAGGCTTGGAGTCAGTTGCATCTGCTTGCTTCAAAGCTACAGGAATCTCTGCAGTACTGATT GACGATGGTTTGAAGTTGGACAGCATGCTGAACATTGATTTGCACAAGAGCTACTTCCCGTTTGTTGGTAGAATATTGAGAATTGAACGATTGGCGGAGG AAATTCTGGAGCAAGAGGGTCCAAACGGTTCAACCTGGACGTTGGACACATTCACTGAAGCGTTTGTGGAAAGCTTGACGTCATATCCTTTCAGTATTAC AGTTGCTAAGGATATATTTGGTTTGAAGAGCATAGCTGCATACCGTAGTGGTCTAGAAATTAACCCGAAAGTGACTAGCAAAGATGCTGCTGAAGGTCTT GCTGAAGTAGTACAATCTGGGAACCCTGTGCGGCTAGTGAACAAAAGCCTTACAGACTACATTTTCGTCCGAAGTTTGGAGGTTGCTTTGACCTTTGACT TACCAGTGCAGATACATACAGGATTTGGAGACAGAGACTTGGACTTACGTTTGGCCAATCCCCTGCACTTACGAGCTGTTCTAGAAGATGAAAGATTTTC TGGAAGTCGTTTTGTAATTTTGCATGCTTCATACCCTTTCTCAAGGGAAGCATCACATCTAGCCTCTGTTTATCCCCAGGTTTATCTCGACTTTGGACTG GCAGTTCCCAAACTTAGCGTCCATGGGATGATATCTTCAGTCAAAGAGCTTCTGGAGGTAGCTCCAACAAAGAAGGTTATGTTCAGCTCCGATGGCTATG CATTTCCTGAAACGTATTATTTAGGAGTGAAAAAAGCACGTGAATGTGTATTTACTGTTCTACAAGATGCATGCCGTGATGGTGATCTTACAGTGGCTGA AGCAGTAGAAGCAGCTACAGATATTCTTGCCCAAAATGCTACCCGATTGTACAAGATCAACATTAGTACAGATCCTACTCAATCAAGAGAAATTGTGTCC AACAGTTCTTTGAACTTCGATGACAGAGCCTCTGAAACCGATATTTCCTTTGTTCGTGTCCTTTGGGTTGATGCATCCGGACAGCACAGATGCCGAGCTG TTCCTGCAAAGCGCTTTAATGAAGTTGTGAAGAGAAATGGTGTTGGCTTGACTTTTGCATGTATGGGAATGGCTTCATATATTGATGCCCCTGCAGATGG CTCTAATCTGACTGGCACAGGTGAGATCAGATTAATGCCTGATCTCTCAACTAAAAGGAAGATCCCATGGATGGAAAAGGAGGAAATGGTTTTGGCTGAT ATGCATCTCAAGCCTGGTGAACCATGGGAGTATTGCCCAAGGGAGGCTTTACGGAGGGTCTCGAAAGTTCTCAAAGATGAATTCGACTTGGTAATGAATG CAGGATTCGAGAATGAGTTTGTAATCTTAAAGAGCTTATCAAGGGATGGGAAAGAAGAATGGATGCCATTTGAATCAACAGCTTACTGCTCTTCAGCAGG ATTCGACGCTGCTTCCCCGATATTACATGAGATTGTCGCCGCTCTCCATTCCCTGAATATACCAGTCGAACAGTTGCATAAGGAAGCTGGAAAAGGTCAA TTGGAGATAGCTCTGGGGCATTCAGCCTGTTTAAATTCGGCAGACAACTTGGTTTATGCACGTGAAGTCATTCGGGCCGTAGCAAGAAAACATGGCTATA TGGCAACTTTCGTGCCAAAGTATGCACTCGATGACATCGGTTCCGGATCCCATGTCCATGTCAGCTTGTCGCAGAATGGAGAGAACGTATTCATGGGAAC TGAAACTTCATCCTCTCAGCATGGAATCTCCAAAGTTGGTAGGGAGTTCATGTCAGGAGTTCTCCACCACCTTCCTTCAGTTCTAGCCTTCACAGCCCCA GTTCCAAACAGGCATCCCTACGACCGGATCCAACCCAACACGTGGAGCGGAGCATATCAATGCTGGGGGAAAGAGAACAGGGAAGCACCATTGCGGACTG CTTGTCCTCCTGGCATCTCAGACGGCCTAGTCAGCAATTTCGAGATCAAGTCTTTCGATGGTTGCGCGAATCCACACCTCGGCTTGGCTGCTATAATAGC TGCTGGCATCGATGGACTCAGGAAGCATCTCGAACTGCCTGAACCTATTGAGACGAACCCTGCGCTCTTTGAAGGGAAGCTCCAACGCTTGCCGCAGTCA CTTTCTGAGTCCGTGGAAGCTCTCGAAAATGATAATGCGTTCGATGATCTGATCGGGGAGAACCTCTTGGTTGCCATAAAAGCAGTTCGCAAGGCATGTC TATTCGGTATATGGTTTGACTTTTACTTTATGGCTGCAAGTAACTTGACTTGCAAGTTACATCTATGTTTGCAGGCTGAGATCGAGCACTACTCCAAGGA CAAGGAGGCTTACAAGCAGATGATATACCGTTACTAG
AA sequence Show only first row Show all	>Lus10023900 pacid=23160744 polypeptide=Lus10023900 locus=Lus10023900.g ID=Lus10023900.BGIv1.0 annot-version=v1.0 MEFKDLREAIEKVQLVDGHAHNIVSFDSSFPFINGFSEATGEAASFSSHSLSFKRNLREIAELYGCGNSLQAVEEHRRSSGLESVASACFKATGISAVLI DDGLKLDSMLNIDLHKSYFPFVGRILRIERLAEEILEQEGPNGSTWTLDTFTEAFVESLTSYPFSITVAKDIFGLKSIAAYRSGLEINPKVTSKDAAEGL AEVVQSGNPVRLVNKSLTDYIFVRSLEVALTFDLPVQIHTGFGDRDLDLRLANPLHLRAVLEDERFSGSRFVILHASYPFSREASHLASVYPQVYLDFGL AVPKLSVHGMISSVKELLEVAPTKKVMFSSDGYAFPETYYLGVKKARECVFTVLQDACRDGDLTVAEAVEAATDILAQNATRLYKINISTDPTQSREIVS NSSLNFDDRASETDISFVRVLWVDASGQHRCRAVPAKRFNEVVKRNGVGLTFACMGMASYIDAPADGSNLTGTGEIRLMPDLSTKRKIPWMEKEEMVLAD MHLKPGEPWEYCPREALRRVSKVLKDEFDLVMNAGFENEFVILKSLSRDGKEEWMPFESTAYCSSAGFDAASPILHEIVAALHSLNIPVEQLHKEAGKGQ LEIALGHSACLNSADNLVYAREVIRAVARKHGYMATFVPKYALDDIGSGSHVHVSLSQNGENVFMGTETSSSQHGISKVGREFMSGVLHHLPSVLAFTAP VPNRHPYDRIQPNTWSGAYQCWGKENREAPLRTACPPGISDGLVSNFEIKSFDGCANPHLGLAAIIAAGIDGLRKHLELPEPIETNPALFEGKLQRLPQS LSESVEALENDNAFDDLIGENLLVAIKAVRKACLFGIWFDFYFMAASNLTCKLHLCLQAEIEHYSKDKEAYKQMIYRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023900 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10023344 [exp]	5.1	0.9636
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10013300 [exp]	6.5	0.9665
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	6.6	0.9741
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	7.3	0.9680
AT1G06000			UDP-Glycosyltransferase superf...		Lus10007971 [exp]	9.3	0.9723
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	9.8	0.9682
AT1G66880			Protein kinase superfamily pro...		Lus10028494 [exp]	9.8	0.9695
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	9.8	0.9714
AT1G50480		THFS	10-formyltetrahydrofolate synt...		Lus10013741 [exp]	16.0	0.9661
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10038983 [exp]	18.5	0.9651

Compare expression of checked genes

Lus10023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.