Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55500 101 / 5e-27 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G37640 99 / 3e-26 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G28950 97 / 4e-25 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT5G02260 96 / 8e-25 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G39700 96 / 1e-24 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G39280 93 / 9e-24 ATEXP23, ATHEXPALPHA1.17, ATEXPA23 EXPANSIN 23, expansin A23 (.1) AT5G39300 91 / 4e-23 ATHEXPALPHA1.18, ATEXP25, ATEXPA25 EXPANSIN 25, expansin A25 (.1) AT5G56320 90 / 1e-22 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT3G29030 89 / 5e-22 ATEXP5, ATHEXPALPHA1.4, ATEXPA5 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1) AT1G69530 88 / 6e-22 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033800 [exp] 242 / 8e-84 AT3G55500 97 / 3e-25 EXPANSIN 16, expansin A16 (.1) Lus10014406 [exp] 142 / 2e-42 AT3G55500 304 / 7e-104 EXPANSIN 16, expansin A16 (.1) Lus10027740 [exp] 103 / 2e-27 AT5G02260 265 / 2e-89 expansin A9 (.1) Lus10024388 [exp] 99 / 4e-26 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10040286 [exp] 97 / 4e-25 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023407 [exp] 95 / 2e-24 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10016533 [exp] 95 / 2e-24 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10040801 [exp] 95 / 2e-24 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10033011 [exp] 92 / 2e-23 AT3G29030 389 / 2e-138 ARABIDOPSIS THALIANA EXPANSIN A5, ARABIDOPSIS THALIANA EXPANSIN 5, expansin A5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097500 [exp] 111 / 1e-30 AT2G39700 301 / 6e-103 expansin A4 (.1) Potri.016G098700 [exp] 108 / 1e-29 AT2G39700 283 / 4e-96 expansin A4 (.1) Potri.006G086100 [exp] 100 / 2e-26 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.008G057100 [exp] 97 / 3e-25 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.009G031800 [exp] 96 / 1e-24 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.010G202500 [exp] 95 / 1e-24 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.004G123200 [exp] 92 / 2e-23 AT1G69530 334 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.017G092700 [exp] 92 / 2e-23 AT5G39280 325 / 6e-113 EXPANSIN 23, expansin A23 (.1) Potri.001G240900 [exp] 92 / 2e-23 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.008G088300 [exp] 91 / 6e-23 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10023901 pacid=23160733 polypeptide=Lus10023901 locus=Lus10023901.g ID=Lus10023901.BGIv1.0 annot-version=v1.0 ATGGCCCTGACGATTCAGTTAGTCATGCCTTGGGGCGGTTCTCCGTCTCCGAACCACAGAGCCACAACCCTCGGCGAGGACGACGGCCCAGACTACCTCC TTTCCGGTCCGGTCCGTGGCAGAGAGCTCACGCCACTTTCTATGAAGGCAACACCAGAACTTATGGCACGTGCGGCTATGACTCATATTATTCGCAAACT TGAATTGACAGGCGGCGCGTGCGACTACACGGACGTGGTGGGGGAAGGGTACGGGATGAACACGGCGGCGCTGAGCAACGCTCTCTTCCGAGACGGCAAG AGCTGCGGGGCTTGTTTCCAGATACAGTGCATCGACGACCCACAGTGGTGTAAGCCAGGTCAGCAATCTCTGTTCGTCACGGCCACCGATCTCTGTCCTC CCACCTCCCAACCCACCCCAGCCCAGCGACAACGGCGGCTGGTGTAA
AA sequence Show only first row Show all	>Lus10023901 pacid=23160733 polypeptide=Lus10023901 locus=Lus10023901.g ID=Lus10023901.BGIv1.0 annot-version=v1.0 MALTIQLVMPWGGSPSPNHRATTLGEDDGPDYLLSGPVRGRELTPLSMKATPELMARAAMTHIIRKLELTGGACDYTDVVGEGYGMNTAALSNALFRDGK SCGACFQIQCIDDPQWCKPGQQSLFVTATDLCPPTSQPTPAQRQRRLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10023901 [exp]	0	1
AT5G38435		SPH8	S-protein homologue 8 (.1)		Lus10029385 [exp]	2.2	0.9025
AT3G06830			Plant invertase/pectin methyle...		Lus10000034 [exp]	3.2	0.8249
					Lus10041547 [exp]	7.3	0.7836
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	7.5	0.8399
AT3G58880			F-box/RNI-like superfamily pro...		Lus10035669 [exp]	9.4	0.8790
AT1G55230			Family of unknown function (DU...		Lus10039191 [exp]	9.9	0.8693
AT2G43610			Chitinase family protein (.1)		Lus10025948 [exp]	13.0	0.8632
					Lus10035708 [exp]	13.0	0.7405
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	28.9	0.8494
AT3G05670			RING/U-box protein (.1)		Lus10007973 [exp]	29.7	0.8365

Compare expression of checked genes

Lus10023901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.