Plant FIBer expression Database

Lus10023902 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G02260 150 / 2e-46 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
AT2G39700 148 / 2e-45 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1)
AT3G55500 145 / 4e-44 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1)
AT5G05290 136 / 8e-41 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1)
AT2G37640 136 / 1e-40 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
AT5G56320 133 / 1e-39 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1)
AT2G03090 132 / 2e-39 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1)
AT2G40610 130 / 2e-38 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1)
AT5G39290 125 / 2e-36 ATHEXPALPHA1.16, ATEXP26 EXPANSIN 26, expansin A26 (.1)
AT1G26770 125 / 2e-36 ATHEXPALPHA1.1, AT-EXP10, ATEXP10, ATEXPA10 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10014406
[exp]
283 / 6e-98 AT3G55500 304 / 7e-104 EXPANSIN 16, expansin A16 (.1)
Lus10033801
[exp]
183 / 4e-61 AT5G02260 90 / 3e-23 expansin A9 (.1)
Lus10040801
[exp]
144 / 1e-43 AT2G39700 456 / 1e-164 expansin A4 (.1)
Lus10016533
[exp]
144 / 1e-43 AT2G39700 456 / 9e-165 expansin A4 (.1)
Lus10023407
[exp]
141 / 1e-42 AT2G39700 445 / 3e-160 expansin A4 (.1)
Lus10040286
[exp]
141 / 2e-42 AT2G39700 447 / 4e-161 expansin A4 (.1)
Lus10027740
[exp]
139 / 1e-41 AT5G02260 265 / 2e-89 expansin A9 (.1)
Lus10020257
[exp]
139 / 2e-41 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1)
Lus10024388
[exp]
137 / 4e-41 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G097500
[exp]
187 / 1e-60 AT2G39700 301 / 6e-103 expansin A4 (.1)
Potri.016G098700
[exp]
160 / 1e-49 AT2G39700 283 / 4e-96 expansin A4 (.1)
Potri.008G057100
[exp]
151 / 1e-46 AT2G39700 459 / 6e-166 expansin A4 (.1)
Potri.010G202500
[exp]
148 / 2e-45 AT2G39700 473 / 2e-171 expansin A4 (.1)
Potri.009G031800
[exp]
148 / 2e-45 AT2G39700 453 / 1e-163 expansin A4 (.1)
Potri.001G240900
[exp]
148 / 2e-45 AT2G39700 449 / 6e-162 expansin A4 (.1)
Potri.006G086100
[exp]
146 / 1e-44 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Potri.001G001100
[exp]
137 / 3e-41 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1)
Potri.013G060800
[exp]
135 / 2e-40 AT2G03090 356 / 1e-125 EXPANSIN 15, expansin A15 (.1)
Potri.008G088300
[exp]
132 / 3e-39 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0159 E-set PF01357 Expansin_C Expansin C-terminal domain
Representative CDS sequence
>Lus10023902 pacid=23160835 polypeptide=Lus10023902 locus=Lus10023902.g ID=Lus10023902.BGIv1.0 annot-version=v1.0
ATGCCCGTCTTCAACCATCTTGCCGAGTACAAGGCCGGAATCATACCCGTCAAGTATCGCAGGGTTCCGTGCAGAAAGAGTGGCGGGATCCGGTACACAA
TGATGGGCAACCAGTGGTTCTACGAGGTCGTGGTTTCGAATGTCGGAGGGTCCGGAGACATCGTGGCCGTTCAAGTGAAGGTGGACAACAAACTCCGGTG
GATATCGTTGGATCACGATTGGGGCGCAACTTGGAAAACTGGGTTTCCTTTGCAAGGAAAATCGTTGAGCTTCAGGGTTCGAGGTAGCGATGGAAGGTAC
TCGACTTCTCCACACGTCGTCCCGAGTAATTGGCAGTTTGGTCAGACCTTTGAAGGGAAGAACTTCAAATTGAAGAATGGAAGAAGAAAGAAGGATTTTG
GCCAAGTGTAA
AA sequence
>Lus10023902 pacid=23160835 polypeptide=Lus10023902 locus=Lus10023902.g ID=Lus10023902.BGIv1.0 annot-version=v1.0
MPVFNHLAEYKAGIIPVKYRRVPCRKSGGIRYTMMGNQWFYEVVVSNVGGSGDIVAVQVKVDNKLRWISLDHDWGATWKTGFPLQGKSLSFRVRGSDGRY
STSPHVVPSNWQFGQTFEGKNFKLKNGRRKKDFGQV

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G02260 ATHEXPALPHA1.10... expansin A9 (.1) Lus10023902
[exp]
0 1
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Lus10032654
[exp]
6.2 0.9316
AT3G51680 AtSDR2 short-chain dehydrogenase/redu... Lus10014227
[exp]
7.1 0.9287
Lus10039824
[exp]
8.1 0.9031
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Lus10006552
[exp]
12.6 0.9435
AT3G61510 AT-ACS1, ACS1 ARABIDOPSIS THALIANA 1-AMINOCY... Lus10007910
[exp]
12.7 0.9337
AT5G23540 Mov34/MPN/PAD-1 family protein... Lus10012494
[exp]
18.0 0.8682
AT2G45380 unknown protein Lus10015873
[exp]
18.2 0.8931
AT5G57510 unknown protein Lus10017598
[exp]
18.8 0.9219
AT1G20870 HSP20-like chaperones superfam... Lus10018368
[exp]
22.0 0.9236
AT4G01575 serine protease inhibitor, Kaz... Lus10030164
[exp]
24.1 0.9304

Lus10023902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.