Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21540 1157 / 0 transducin family protein / WD-40 repeat family protein (.1) AT5G16750 90 / 5e-18 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 84 / 2e-17 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 86 / 5e-17 TAF5 TBP-associated factor 5 (.1) AT5G08390 84 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 84 / 5e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 82 / 9e-16 Transducin/WD40 repeat-like superfamily protein (.1.2) AT2G43770 76 / 2e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 77 / 3e-14 Transducin/WD40 repeat-like superfamily protein (.1) AT5G13480 76 / 5e-14 FY Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012475 [exp] 1415 / 0 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10033802 [exp] 1130 / 0 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 89 / 1e-18 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 87 / 3e-18 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020214 [exp] 86 / 6e-17 AT5G13480 738 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10041007 [exp] 84 / 2e-16 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 84 / 5e-16 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10026837 [exp] 83 / 5e-16 AT5G13480 759 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10024447 [exp] 82 / 9e-16 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121100 [exp] 1290 / 0 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.018G020200 [exp] 89 / 6e-18 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G263400 [exp] 89 / 8e-18 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.007G009500 [exp] 82 / 2e-16 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 84 / 3e-16 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 80 / 6e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 83 / 7e-16 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G002300 [exp] 82 / 1e-15 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 79 / 1e-15 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G026800 [exp] 80 / 5e-15 AT5G13480 726 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF04003 [flax] [poplar] Utp12 Dip2/Utp12 Family
Representative CDS sequence Show only first row Show all	>Lus10023903 pacid=23160699 polypeptide=Lus10023903 locus=Lus10023903.g ID=Lus10023903.BGIv1.0 annot-version=v1.0 ATGGTGAAATCGTATCTTAGGTACGAGCCTCGAGCTTCGTTCGGGGTTATAGCGTCAGGCGAGTCGAACATAGCCTACGACAGCTCCGGCAGGTACCTGC TAGCTCCGGCGCTCGAGAAGGTCGGAGTTTGGCACGTCAGGCAAGGAATATGCTCTAGGACGCTAGAGCCTTCTTCAGCTTCTCGCGCTGGGCCTTCTCT TGCTGTAACGCACATAGCCTCCTCTGCTACTTCTCTGGTAGCAAGTGGTTATGCCGACGGTTGTATAAGAATTTGGGATAGTGATAAGGGGACCTGTGAG ACCACGTTGAATGGCCACAAAGGTGCAGTAACTGTTCTGCGGTACAACAAGAATGGTGCTCAGCTTGCATCTGGAAGTAAAGATAATGATATCATATTGT GGGATGTGGTTGGGGAGGCTGGCCTCTTTCGCCTTCGAGGACATCGTGACCAGGTTACTGGCCTTGTGTTTTTGGAGTCTGGGAAGAAATTAGTGAGTTC TTCCAAAGACAAATTTATGCGGGCGTGGGATCTGGAAACACAGCATTGTGTGCAAATAATTAGTGGCCATCATAGCGAGATTTGGTCGATTGATGTCGAT CGAGAGGAAAGATACTTGGTTAGTGGTTCTGCAGACCCTGAACTTCGGGTTTACATTATTAAGCATGACTTGGAAAACAATCAAGGTGACAAAGGGGATG GCAACAAGTGGGAAGTTTTGAAACTCCTTGGTGAAATCCAGAGGCCAACAAAAGATAGGGTTGCAACTGTGAGGTTCAATATGTCAGGAACCTTGCTTGC TTGTCAATCAGTAGGCAAGATGGTTGATGTATACAATGTCCTTGACGATGCTGAAGCAAAGCGCAAGGCTAAACGTAGGGTTCACAGGAAGAAGGAAAAG AAGTCTTCAAAAGGAGCAGTTGAGGTCACTGAAAATGATAAAGACCTTGCTGCAGAAGAAGATGGAAAAAGCCCAGTGATTACTGTGACTGACATTTTTA AGCTTCTCCAAACCATTCGAGCTGGAAAAAAAGTGTGCTCCATTTCTTTCAGCCCAACCACTACTAAGAACTCATTGGCGACACTGGCGTTGTCATTGAA TAACAACTTATTGGAGTTCTATTCTATAGACAGCAATACAAGCACAAAAAGCCTAGCTCTTGAGCTACAGGGGCACAGGTCTGATGTTAGGAGTCTGACA CTTACTTCAGACAACAGTCTTTTGATGTCCACCAGTCACGATGCAGTAAAGATTTGGAATCCCAGTACCGGTTCTTGTCTTCGAACTATTGAATCTGGAT ACGGACTATGTGGTTTATTTGTTCCTAAGAACAGATATGCACTTGTCGGGACAAAATCTGGCGCTGTTGAAATCATAGATATTGGCAGTGGCACGAGAGC TGAAGTAGTGGAAGCTCACGGTAGCGCCATTCAGTCAATTGCTGCTATTCCAAATGAAACCGGTTTTGTAACAGGCAGTGCAGATCACGATGTTAAGTTT TGGGAGTATGAAATGAAGCAGAAACCTGGTCAAGATACGAAGCAGCTAACCTTATCTAATGTCAGGTCTCTGAAGATGAATGATGACGTTCTAGTGGTTG CAGTTGACCCTGATGCTAAATATATTGCTGTTGCCTTGTTAGATAACACAGTGAAGGTTTTCTTCATGGATTCGCTCAAGCTCTTTCTTACATTATACGG TCACAAGCTACCCGTAATGTGCATGGATATTTCTTCAGATGGAGATTTGATTGTTACTGGCTCAGCTGACAAAAACTTGAAGATTTGGGGTTTGGACTTT GGTGACTGTCATAAATCTCTATTCGCTCATAACGATAGTGTCATGGCAGTTAAATTTGTTGCCAACACTCACTATATGTTCAGTGTCGGAAAAGATAAAC TCGTAAAGTACTGGGATGCAGACAAGTTTGAGGAGCTTTTGTCTCTCGATGGGCATCATGCTGACATTTGGTGTCTTGCAATCAGCAGCCGTGAGAAGGA GAAAAGGTTGGAAGAAATGTTCGAAGCTGATCAGGAAAATCCATTTGAAAACAGATCTGCACCCAAGGAAGAGATCCCGGAAGAAGGAGCAGTTGCCTTG GCTGGGAAGAAAACTCAAGAAAGTCTCACGGCCACCGATGTGATTGTCGAAGCACTAGACATAGCAGAAGACGAGTTGAGCCGTATCGCTGAACATGAAG ATGAGGAGAGAGCTAGGGGCCAAGCTTCTCGCTTCCAACCGAATATTATGTTGAAAGGGCTTTCACCTTCCAATTACATTCTTGATTCCCTCTCAAAAGT TCATGCAAATGATCTGGAGCAGACAATGCTGGCTTTACCATTCACAGATGCTCTGAAGATTTTAGCATACCTTAAGGACTGGATCCCAATCCCTGATAAG GTCGAGTTAGTCTGCAGAATTGCAACGGTACTGTTGCAGATCAACTTTAACCAGCTAGTCAGCACTCCTGCTTCTAGACCTATTTTGACTGTGCTCAAGG ATGAACTCCATTTAAGCGTCAAGGAATGCAAAGACATTCTTGGTTTCAATCTAGCAGCAATGGATCATCTGAAGCAAATCATGGCCTCGAGATCAGACGC ACTCTTCCAAGATGCAAAGGAAAAGCTTCAGGAAATCCTGTCGCAGCAATCGAAACGCTTGGAAGCAAGATCGGAGACCAAAGGGGAGAAGCGGAGGAAG AAGAAACAGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10023903 pacid=23160699 polypeptide=Lus10023903 locus=Lus10023903.g ID=Lus10023903.BGIv1.0 annot-version=v1.0 MVKSYLRYEPRASFGVIASGESNIAYDSSGRYLLAPALEKVGVWHVRQGICSRTLEPSSASRAGPSLAVTHIASSATSLVASGYADGCIRIWDSDKGTCE TTLNGHKGAVTVLRYNKNGAQLASGSKDNDIILWDVVGEAGLFRLRGHRDQVTGLVFLESGKKLVSSSKDKFMRAWDLETQHCVQIISGHHSEIWSIDVD REERYLVSGSADPELRVYIIKHDLENNQGDKGDGNKWEVLKLLGEIQRPTKDRVATVRFNMSGTLLACQSVGKMVDVYNVLDDAEAKRKAKRRVHRKKEK KSSKGAVEVTENDKDLAAEEDGKSPVITVTDIFKLLQTIRAGKKVCSISFSPTTTKNSLATLALSLNNNLLEFYSIDSNTSTKSLALELQGHRSDVRSLT LTSDNSLLMSTSHDAVKIWNPSTGSCLRTIESGYGLCGLFVPKNRYALVGTKSGAVEIIDIGSGTRAEVVEAHGSAIQSIAAIPNETGFVTGSADHDVKF WEYEMKQKPGQDTKQLTLSNVRSLKMNDDVLVVAVDPDAKYIAVALLDNTVKVFFMDSLKLFLTLYGHKLPVMCMDISSDGDLIVTGSADKNLKIWGLDF GDCHKSLFAHNDSVMAVKFVANTHYMFSVGKDKLVKYWDADKFEELLSLDGHHADIWCLAISSREKEKRLEEMFEADQENPFENRSAPKEEIPEEGAVAL AGKKTQESLTATDVIVEALDIAEDELSRIAEHEDEERARGQASRFQPNIMLKGLSPSNYILDSLSKVHANDLEQTMLALPFTDALKILAYLKDWIPIPDK VELVCRIATVLLQINFNQLVSTPASRPILTVLKDELHLSVKECKDILGFNLAAMDHLKQIMASRSDALFQDAKEKLQEILSQQSKRLEARSETKGEKRRK KKQKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21540			transducin family protein / WD...		Lus10023903 [exp]	0	1
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	2.4	0.8930
AT1G42440			unknown protein		Lus10013232 [exp]	3.0	0.8997
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	5.3	0.8815
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10036232 [exp]	7.3	0.8820
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	7.6	0.8233
AT5G07810			SNF2 domain-containing protein...		Lus10003469 [exp]	10.1	0.8180
AT2G18900			Transducin/WD40 repeat-like su...		Lus10036290 [exp]	10.9	0.8392
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	11.3	0.8200
AT1G75200			flavodoxin family protein / ra...		Lus10012082 [exp]	11.4	0.8668
AT3G57170			N-acetylglucosaminyl transfera...		Lus10033869 [exp]	12.8	0.8525

Compare expression of checked genes

Lus10023903 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.