Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 283 / 3e-88 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014407 [exp] 456 / 1e-154 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10024005 [exp] 386 / 2e-133 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023900 [exp] 375 / 4e-123 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023905 [exp] 355 / 7e-122 AT3G53180 403 / 2e-134 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023906 [exp] 60 / 9e-11 AT3G53180 199 / 2e-60 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 298 / 6e-94 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023904 pacid=23160823 polypeptide=Lus10023904 locus=Lus10023904.g ID=Lus10023904.BGIv1.0 annot-version=v1.0 ATGATTAGTAAGGAGTTGAGAGAAGCAATAAACGATGGTTCTAACGGTTCTCTGAACTTGGACGGTGACAAAGCATCCGAGGCCGATGTTTCCCTTGTTC GTCTCATCTGGGTTGATGCAGCCGGCATCCACAGATGCCGAGGGTTTCCTGCAAACCGCTTCAATAAGGTTGTGACGAGGAGTGGTGCCGGCTTGACTTA CACACGCATGGCTTTCCCTTCATACATTGATTCTCCTGCAGAGGGGTGTAACCTGGCTTGCGCCGGTGAGATCAGGCTAATGCCTGATCTCTCTACTAAA ACTAAGATCCCACGGATGGATAGGCAGGAAATGGTTTTGTCTGACATGCATGTCACCCCCGTTGAACCATGGGAGTATTGCCCAAGGGGAACTTTACGGA GGCTCTCGAAAATTCTCGAGGACGAATTCGACTTGGTTATGAATCCAGGATTCGAGAATGAGTTTGTAATCTTAAAGAGTGTATCAAGGGATGGGAAAGA AGAATGGGTGCCATTTGAATCAACAGCTTACTGCTCCACAGCAGGATTCGATGCTGCTTCCCCATTATTCCAAGACATGGTCGATGCTCTCGATTTCCTC GATATACCTTTCGAACAGGTGCATAAGGAAGCTGGGAAAGGTCAATTGGAGATAGCTCTGGAGTATTCGGCCAGTTTAAATTCTGCAGACAATGTGATTT ACTCACGTGAAGTCATTCGCTCCGTAGCAAGGAAACATGGCTATATTGCCACATTCATCCCCAACTTCATCCTCTCAGCACGGAATCTCCAAGGTCGGGA GAGAGTTCATGGCAGGAGTTCTCCACCACATTCCTTCCATTCTAGCCTTCATAGCACCAGTTCCAAGCAAGCAGCACTGCGGACTGCTCGTACCCTGCCC TCCTCGAAGGGAAGATCCAACGCTTGCCGAGGTCACTCTCCGAGTCCGTGGAGGCTGATCGGGTCGAAACTTTGCGTTGCCATAAAAGCGGTTCGCAAGG CCGAGATCGAGTACTACTCCAAGAACAAGGAGGCTTTCAAGGAAATGATATTCCGTTACTAG
AA sequence Show only first row Show all	>Lus10023904 pacid=23160823 polypeptide=Lus10023904 locus=Lus10023904.g ID=Lus10023904.BGIv1.0 annot-version=v1.0 MISKELREAINDGSNGSLNLDGDKASEADVSLVRLIWVDAAGIHRCRGFPANRFNKVVTRSGAGLTYTRMAFPSYIDSPAEGCNLACAGEIRLMPDLSTK TKIPRMDRQEMVLSDMHVTPVEPWEYCPRGTLRRLSKILEDEFDLVMNPGFENEFVILKSVSRDGKEEWVPFESTAYCSTAGFDAASPLFQDMVDALDFL DIPFEQVHKEAGKGQLEIALEYSASLNSADNVIYSREVIRSVARKHGYIATFIPNFILSARNLQGRERVHGRSSPPHSFHSSLHSTSSKQAALRTARTLP SSKGRSNACRGHSPSPWRLIGSKLCVAIKAVRKAEIEYYSKNKEAFKEMIFRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	0	1
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	1.0	1.0000
					Lus10000380 [exp]	1.4	1.0000
					Lus10010383 [exp]	1.7	1.0000
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	2.0	0.9994
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	2.4	0.9856
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	2.6	0.9820
					Lus10009632 [exp]	3.2	0.9972
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	3.2	0.9482
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10039501 [exp]	4.0	0.9672
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	4.4	0.8539

Compare expression of checked genes

Lus10023904 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.