Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 388 / 1e-128 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023900 [exp] 518 / 9e-179 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10014407 [exp] 432 / 2e-145 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023904 [exp] 342 / 1e-116 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10024005 [exp] 291 / 2e-96 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 404 / 5e-135 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023905 pacid=23160743 polypeptide=Lus10023905 locus=Lus10023905.g ID=Lus10023905.BGIv1.0 annot-version=v1.0 ATGGAGTTGAAGGAGTTGAGAGAAGCGATTGAGAAGATTTTGGTCTACTTCCACGCACAGACCTCAAAAATTTCTTTCAACTTGGAAGACAGAGCCTCAG AACCCGATGTTTCCATTGTTCGAGTCATTTGGGTTGATACATCCGGGCAGCACAGATGCCGAGCTGTTCCTGCAAAGCACTTTAATGAGGTGGTGAAAAA GAGTGGTGTCAGCTTGCTTTCTTCATGTATGGTTTTCCCTTCATACCATGATATTGTTCCAGATGGCTCTAACCTAACTTGCTCCGGTGAGGTCAAATTA ATGCCTGATCTCTCAACTAAAAGAAAGATCCCATGGATGGACAAGGAGGAAATGGTTCTGGCTGATATGCTTCTCAAGCCTGGTGAACCGTGGGAGTATT GCCCTAGGGAGGCTTTACGGAGGGTCTCCGAAATTCTCAAAGACGAATTCGACTTGGTAATGAATGCAGGATTCGAGAATGAGTTTGTACTCTTGAAGAA TGCATCAAGGGATGGGAAAGACGAATGGATGCCATTTGAATCAACAGGGTACTGCTCCACATCAGGATATGATGCTGCTTCCCCAATGTTACATGACATT GTTGCAGCTCTGGATTCCCTGAATATACCAGTTGAACAGATGCACAAGGAATGTGGTAAAGGCCAATTGGAGATAGTTCTGGGGCATTCAGCTGTTCTAA CTTCTGCAGACAACTTGGTGTATGCACGTGAAGTCATTCGGTCTGTTGCTAGAAAACATGGATTCATCGCAACTTTCGTGCCAAAGTATGCACTTGATGA CACTGGTTCTGGATCACACGTGCATGTAAGCCTGTGGCAAAACGGAGAGAACGTATTCATGGGAACTGAAGGTTCTAGCTCTCAGCACGGAATTTCCAGA GTCGGTAGGGAGTTCATGTCAGGAGTTCTCCACCACCTTCCTTCAGTTCTAGCCTTCACAGCACCACTTCCAAACAGGCATATCCATTTCTCTCTTCCAT ACAGCTTAATTCATCCTTTAGAGTTCGTGTCAGCCTGA
AA sequence Show only first row Show all	>Lus10023905 pacid=23160743 polypeptide=Lus10023905 locus=Lus10023905.g ID=Lus10023905.BGIv1.0 annot-version=v1.0 MELKELREAIEKILVYFHAQTSKISFNLEDRASEPDVSIVRVIWVDTSGQHRCRAVPAKHFNEVVKKSGVSLLSSCMVFPSYHDIVPDGSNLTCSGEVKL MPDLSTKRKIPWMDKEEMVLADMLLKPGEPWEYCPREALRRVSEILKDEFDLVMNAGFENEFVLLKNASRDGKDEWMPFESTGYCSTSGYDAASPMLHDI VAALDSLNIPVEQMHKECGKGQLEIVLGHSAVLTSADNLVYAREVIRSVARKHGFIATFVPKYALDDTGSGSHVHVSLWQNGENVFMGTEGSSSQHGISR VGREFMSGVLHHLPSVLAFTAPLPNRHIHFSLPYSLIHPLEFVSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023905 [exp]	0	1
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	5.5	0.8965
AT5G62230		ERL1	ERECTA-like 1 (.1.2)		Lus10031108 [exp]	8.5	0.9006
AT4G15880		ATESD4, ESD4	EARLY IN SHORT DAYS 4, Cystein...		Lus10035382 [exp]	12.0	0.8923
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013336 [exp]	14.1	0.8879
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	19.3	0.8922
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	20.2	0.8867
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	21.1	0.8673
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	21.2	0.8757
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	21.7	0.8764
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10018520 [exp]	22.1	0.8831

Compare expression of checked genes

Lus10023905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.