Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 170 / 6e-50 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024005 [exp] 212 / 8e-69 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023900 [exp] 197 / 8e-60 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10014407 [exp] 190 / 6e-57 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023908 [exp] 119 / 2e-35 AT3G53180 115 / 5e-31 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10033799 [exp] 86 / 2e-22 AT3G53180 104 / 2e-27 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023904 [exp] 0 / 1 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 180 / 1e-53 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10023906 pacid=23160672 polypeptide=Lus10023906 locus=Lus10023906.g ID=Lus10023906.BGIv1.0 annot-version=v1.0 ATGTGGACTGGAGCATATCAATGCTGGGGGGAAGAGAACAAGGAAGCACCACTGCGGACTGCTCGTCCTCCTGGCATCTCAGATGGCATAGTTAGCAATT TCGAGATCAAGTGTTTCGATGGTTGCGCCAATCCATACCTCGGCTTGGCTGCCATCCTAGCTGCTGGCATTGATGGCCTCAGGAGGCATCTCGAACTCCC TGAACCTGTTGATACGAATCCTTCCCTGTTAGATGGGAAGCTCCAACGTTTGCCGAAGTCACTCTCTGAGTCCGTGGAAGCTCTCGAAAACGATAGTGTG TTGGATGATCTGATTGGGGATAACCTTTGTGACGCCATAAAAGTAGTTCGCAAGGCCGAGATCAAGCACTATTCCAAGAATAAGGACGCTTTCAAGCAAA TGATATTCCGTTACTAG
AA sequence Show only first row Show all	>Lus10023906 pacid=23160672 polypeptide=Lus10023906 locus=Lus10023906.g ID=Lus10023906.BGIv1.0 annot-version=v1.0 MWTGAYQCWGEENKEAPLRTARPPGISDGIVSNFEIKCFDGCANPYLGLAAILAAGIDGLRRHLELPEPVDTNPSLLDGKLQRLPKSLSESVEALENDSV LDDLIGDNLCDAIKVVRKAEIKHYSKNKDAFKQMIFRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023906 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023908 [exp]	9.5	0.7880
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	12.7	0.7678
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10022276 [exp]	20.7	0.7544
AT2G28230			TATA-binding related factor (T...		Lus10030830 [exp]	23.8	0.7528
					Lus10005392 [exp]	26.0	0.7203
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10035367 [exp]	27.3	0.7211
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Lus10042414 [exp]	28.6	0.7032
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	29.3	0.7399
AT1G48870			Transducin/WD40 repeat-like su...		Lus10033525 [exp]	30.8	0.7051
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	33.5	0.6907

Compare expression of checked genes

Lus10023906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.