Plant FIBer expression Database

Lus10023907 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G53180 112 / 3e-30 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023900
[exp]
128 / 1e-35 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Lus10014407
[exp]
60 / 1e-11 AT3G53180 530 / 1e-175 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G121000
[exp]
109 / 3e-29 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info
Representative CDS sequence
>Lus10023907 pacid=23160737 polypeptide=Lus10023907 locus=Lus10023907.g ID=Lus10023907.BGIv1.0 annot-version=v1.0
ATGAAGCTGGTCGACTGCCACGCACACAACATCGTCTCGCTCGATTCCTCGTTTCCTTTCCTCAATGAAGCCACCAGCGACTTCGCTCCTCATTCCCTTT
CCTTCAAGGAATCAGTTGCATCTGCTTGCTTCAAAGCAGCAAGAATCTCTGCGGTGCTAGTTGACGATGGTTTGAAGTTGGACAGTATTCTGAAGATTGA
CTGGCACAGAAGTTACTTCCCGTCTGTGGGTAGAATATTAACAATTGAACGATTAGCGGAGGAAATTCTGGAACAAGTGAGATATATAGCTTCTGACATG
ATAAATTAG
AA sequence
>Lus10023907 pacid=23160737 polypeptide=Lus10023907 locus=Lus10023907.g ID=Lus10023907.BGIv1.0 annot-version=v1.0
MKLVDCHAHNIVSLDSSFPFLNEATSDFAPHSLSFKESVASACFKAARISAVLVDDGLKLDSILKIDWHRSYFPSVGRILTIERLAEEILEQVRYIASDM
IN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G53180 NodGS nodulin/glutamine synthase-lik... Lus10023907
[exp]
0 1
AT1G71760 unknown protein Lus10004010
[exp]
10.8 0.7956
AT4G01860 Transducin family protein / WD... Lus10038045
[exp]
13.2 0.7972
AT1G72810 Pyridoxal-5'-phosphate-depende... Lus10003316
[exp]
17.1 0.7297
AT2G32350 Ubiquitin-like superfamily pro... Lus10039679
[exp]
24.3 0.7653
AT4G14180 ATPRD1 putative recombination initiat... Lus10021481
[exp]
26.0 0.7531
AT5G16630 ATRAD4 DNA repair protein Rad4 family... Lus10000108
[exp]
31.1 0.7826
AT5G53210 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-h... Lus10014938
[exp]
36.2 0.7685
AT1G13630 Tetratricopeptide repeat (TPR)... Lus10036836
[exp]
38.8 0.7631
AT4G15790 unknown protein Lus10004794
[exp]
40.9 0.7624
AT4G01030 pentatricopeptide (PPR) repeat... Lus10017350
[exp]
44.8 0.7334

Lus10023907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.