Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09920 1171 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 730 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 726 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G21980 605 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 593 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 575 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 574 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 558 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 490 / 4e-163 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 254 / 2e-76 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014408 [exp] 1625 / 0 AT3G09920 1228 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 1331 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 1330 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10015456 [exp] 754 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 753 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 711 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 705 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10018200 [exp] 596 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 595 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121200 [exp] 1332 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 766 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 734 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.002G088100 [exp] 607 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 605 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G027900 [exp] 591 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 585 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 576 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.004G139900 [exp] 469 / 3e-154 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 465 / 1e-152 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10023909 pacid=23160757 polypeptide=Lus10023909 locus=Lus10023909.g ID=Lus10023909.BGIv1.0 annot-version=v1.0 ATGTCTGGTCCATTGGCCAACGTAGAGGGTGTGGGAAGAGGACTTACTTTGTCAGACAGAACAAAATCTGTTGATGCCATCTCCAGTAGAGAATTATCTT CTATTTCAGTCAACGGTGACGTTTCTCACAGGATCTCCGAAAGTGCCGCTTTCAAAATCGGTGAGCTGTTTCTTCCCAATGGAGAATCATACTGTGGGTC ACTGCTGGGCAGTGTACCAGAAGGTACCGGAAAGTATGTTTGGTCAGATGGTTGCATTTATGAGGGCGAATGGAGACGGGGAACAAGAAATGGAACTGGG AAAATTCAGTGGCCTTCTGGAGCCGCTTACGAAGGTGAATTTTCAGGTGGATATATGCACGGTGCAGGTAACTACATTGGTGCCAACAACGTAAGCTACA GGGGAAGATGGCGATTGAATCTCAAGCATGGCTTGGGTTATCAAGTTTATCCTAACCGAGATGTCTTTGAAGGTTCTTGGTTACAAGGAACACCAGAAGG GCCTGGCAAGTATAGCTGGGCTAATGGAAATGTATACGTGGGGAACATGAAAGGAGGGAAAATGACAGGGAAAGGAACTCTTACTTGGATGAATGGAGAC TCATTTGAAGGAAGCTGGTTAAATGGGATGATGCATGGATTAGGAGTATATACCTGGACTGATGGTGGTTGCTATGTTGGAACTTGGAGTCATGGTCTGA AGGATGGAAAAGGAACGTTTTATCCATGTGGCAGTCGGTTCCCTTCGGTACAAGAACGATACCTCAATGCACTTCGAAAGAGGGGGTTACTGCCTGATAT GAGAAAGCAGAACCAAGCACATATACACCATGCATCTTCAGGAGATATGGGTAGCGTCAAGGTTGGCAGAGAGCAAAGGTCTCATCGCGATTCATCTGGG AACCTATCCAAGGGAAGCTTGATAAGCTTGGAGCAATCTAGAAACAAAAATGTTTCCTTGGAACGGCGGTGGAGTCTTGAGGTAGCAATTGAAAAGGTGA TTGGACATGATTCATCATTAGAGTCATCTGAATATGATGGAGCAAATGTTCCACCGATCCTGGAAAGAGAATACATGCAAGGTGTTCTGATTAGTGAGAT CGTACTAAATGATAACTTTTCATCGTTGTCCAGAAGTGCAAAACGGCGACAGAAAAAGTTCGTGAGGGAGATCAAGCGGCCTGGCGAAACGATTCTTAAA GGGCATCGCAGTTATGATCTGATGCTCAGTTTGCAGCTCGGTATCAGGTATACTGTTGGAAAAATTACACCTGTTCAAAGAAGAGAAGTCCGTGCATCAG ATTTCGGTCCAAGGGCAAGCTTTTGGATGCAATTCCCAAAGGAAGGGTCCCAGCTGACACCACCTCATCGTTCAGATGATTTTAAGTGGAAGGACTACTG CCCAATGGTTTTTAGGAATTTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATATCTATATGTGGAAATGATGCTCTTAGGGAACTATCTTCT CCAGGGAAGAGTGGGAGCATATTTTTCTTGTCTCAAGACGATCGCTTCATGATTAAAACACTCAGGCTGTGGATTCTTATTGTGCAGGTACTTCTGGACA TGCTTCCTGATTACCACCACCACGTGAGAAGATACGAAAACACACTGATAACGAAGTTCTTTGGTCTTCATAGAATCAAACCTTCAAGTGGTCAAAAGTT TCGCTTTGTAGTCATGGGAAACATGTTCTGCACAGAGTTGAGAATCCATCGAAGGTTTGATCTGAAAGGTTCTTCGCTGGGTCGATCTACCGAAAAGATA GAAATCGACGAGAACACAACCCTCAAGGATTTGGATCTGGACTACAGCTTCTATTTAGAACCTTCCTGGAGGGAGTCTCTACTAAAGCAGATAGAGATTG ACAGCAAATTTCTGGAAGCACAGCGCATAATGGATTACAGCCTTCTACTAGGTGTGCATTTTAGAGCCCCGCAGCACCTTCGGTCCTTCAACCGAAGCTT ATTGAACGAAGGTTTGGGCGTTCTTGCAGAAGAAGATACAATTGACGACGAGAGATACCCGCAAGGTGTGGTCCTCGTCCCTCGCGGAGAAGACGATGGA AGTGTCGTTGTTGGTCCTCACGTCAGAGGCAGTCGGCTGAGAGCTTCATCTGCAGGTGACGAAGAAGTTGATCTCCTTCTGCCTGGTACTGCTAGGCTAC AAATCCAGCTAGGGGTAAACATGCCGGCTCGAGCGGAGCAGATGGCCGAGGAAGAAGCAGGGAAACAGAGGTTTCACGGAGTATACGACGTAGTCCTCTA CCTCGGCATAATCGACATTCTCCAGGACTACAACATGACGAAGAAAATTGAGCACGCTTACAAGTCTTTCCAGTTCGATTCCTTGTCGATCTCGGCCGTC GATCCAACATTCTACTCGAAACGGTTCCTCGAGTTCATTCAGAAGGCATTCCCTCCTAATGCTGTCACCCACTGA
AA sequence Show only first row Show all	>Lus10023909 pacid=23160757 polypeptide=Lus10023909 locus=Lus10023909.g ID=Lus10023909.BGIv1.0 annot-version=v1.0 MSGPLANVEGVGRGLTLSDRTKSVDAISSRELSSISVNGDVSHRISESAAFKIGELFLPNGESYCGSLLGSVPEGTGKYVWSDGCIYEGEWRRGTRNGTG KIQWPSGAAYEGEFSGGYMHGAGNYIGANNVSYRGRWRLNLKHGLGYQVYPNRDVFEGSWLQGTPEGPGKYSWANGNVYVGNMKGGKMTGKGTLTWMNGD SFEGSWLNGMMHGLGVYTWTDGGCYVGTWSHGLKDGKGTFYPCGSRFPSVQERYLNALRKRGLLPDMRKQNQAHIHHASSGDMGSVKVGREQRSHRDSSG NLSKGSLISLEQSRNKNVSLERRWSLEVAIEKVIGHDSSLESSEYDGANVPPILEREYMQGVLISEIVLNDNFSSLSRSAKRRQKKFVREIKRPGETILK GHRSYDLMLSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMQFPKEGSQLTPPHRSDDFKWKDYCPMVFRNLREMFKIDAADYMISICGNDALRELSS PGKSGSIFFLSQDDRFMIKTLRLWILIVQVLLDMLPDYHHHVRRYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSTEKI EIDENTTLKDLDLDYSFYLEPSWRESLLKQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSFNRSLLNEGLGVLAEEDTIDDERYPQGVVLVPRGEDDG SVVVGPHVRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPARAEQMAEEEAGKQRFHGVYDVVLYLGIIDILQDYNMTKKIEHAYKSFQFDSLSISAV DPTFYSKRFLEFIQKAFPPNAVTH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	0	1
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	1.0	0.9015
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	1.4	0.8503
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	3.9	0.7967
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Lus10000609 [exp]	5.7	0.8138
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	7.1	0.8449
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	9.0	0.8201
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	9.8	0.8121
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	10.2	0.8231
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Lus10025002 [exp]	12.0	0.8369
AT1G27100			Actin cross-linking protein (....		Lus10036693 [exp]	16.1	0.8322

Compare expression of checked genes

Lus10023909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.