Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 338 / 1e-119 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT1G43890 297 / 1e-103 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT3G09910 280 / 6e-97 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G02130 175 / 2e-55 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT3G11730 169 / 4e-53 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT5G47200 166 / 5e-52 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT4G17530 166 / 6e-52 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT5G59840 166 / 6e-52 Ras-related small GTP-binding family protein (.1) AT4G35860 166 / 8e-52 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G53610 166 / 1e-51 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014409 [exp] 396 / 2e-142 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 365 / 3e-130 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 365 / 4e-130 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 298 / 1e-98 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 279 / 3e-92 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10040423 [exp] 259 / 2e-88 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 230 / 2e-76 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 228 / 1e-75 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10010999 [exp] 170 / 2e-53 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097800 [exp] 352 / 3e-125 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 347 / 3e-123 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 300 / 2e-104 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.010G229600 [exp] 295 / 2e-102 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.005G063500 [exp] 290 / 9e-101 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 288 / 5e-100 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.008G032000 [exp] 269 / 3e-92 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.003G081800 [exp] 174 / 7e-55 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.001G080400 [exp] 173 / 9e-55 AT1G02130 387 / 2e-139 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.014G049400 [exp] 173 / 1e-54 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10023910 pacid=23160812 polypeptide=Lus10023910 locus=Lus10023910.g ID=Lus10023910.BGIv1.0 annot-version=v1.0 ATGGGATCTTCTTCAGGTAGTAGTGGGTATGATCTGTCGTTCAAGTTGTTGTTGATTGGAGATTCAAGTGTTGGCAAAAGCAGCCTGCTTGTCAGCTTCA TCTCCACCACCTCTGCTGAAGAAGATCTTGCTCCCACCATTGGTGTGGACTTCAAGATCAAGCAGCTGACAGTAGCTGGCAAGAGATTGAAGCTCACCAT TTGGGATACTGCTGGGCAGGAGAGGTTCAGGACACTAACAAGCTCTTACTACAGGAATGCACAGGGTATCATACTTGTTTATGACGTGACCAGGAGAGAG ACCTTTACGAACCTATCGGACGTATGGGCTAAAGAAGTTGAGCTCTACTGCACAAACCAGGACTGTGTCAAGATGCTTGTTGGCAACAAAGTTGACAAAG ACTCTGACAGAACTGTAACCAGAGAAGAAGGAATGGAACTTGCAAAAGAGCGTGGATGTTTGTTCCTCGAGTGCAGTGCCAAAACTCGTGAAAACGTGGA GCAATGCTTCGAGGAGCTTGCGCAAAAGATAAAGGATGTTCCAAGTCTCTTGGAAGAAGGATCTACGGCCGGGAAGAGGAACATTCTAAAGCAAAACCCA GATCGCCAAATGTCTCAAAGCAACGGCTGTTGCTCTTAA
AA sequence Show only first row Show all	>Lus10023910 pacid=23160812 polypeptide=Lus10023910 locus=Lus10023910.g ID=Lus10023910.BGIv1.0 annot-version=v1.0 MGSSSGSSGYDLSFKLLLIGDSSVGKSSLLVSFISTTSAEEDLAPTIGVDFKIKQLTVAGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE TFTNLSDVWAKEVELYCTNQDCVKMLVGNKVDKDSDRTVTREEGMELAKERGCLFLECSAKTRENVEQCFEELAQKIKDVPSLLEEGSTAGKRNILKQNP DRQMSQSNGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10023910 [exp]	0	1
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Lus10040427 [exp]	6.3	0.7715
AT4G17486			PPPDE putative thiol peptidase...		Lus10019437 [exp]	6.3	0.7934
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	6.5	0.7702
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	8.1	0.8173
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10026702 [exp]	8.5	0.7380
AT4G32000			Protein kinase superfamily pro...		Lus10001939 [exp]	13.8	0.7600
AT5G35670		IQD33	IQ-domain 33 (.1)		Lus10002265 [exp]	13.9	0.7623
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10041571 [exp]	16.5	0.7405
AT3G01750			Ankyrin repeat family protein ...		Lus10022330 [exp]	21.6	0.7448
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	21.6	0.7191

Compare expression of checked genes

Lus10023910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.