Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09890 212 / 5e-70 Ankyrin repeat family protein (.1.2) AT2G28840 77 / 2e-16 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G40160 71 / 2e-14 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT4G19150 70 / 2e-14 Ankyrin repeat family protein (.1.2) AT2G25600 70 / 7e-14 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G35450 65 / 2e-12 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT2G03430 64 / 3e-12 Ankyrin repeat family protein (.1) AT2G26650 63 / 2e-11 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT2G17390 62 / 3e-11 AKR2B ankyrin repeat-containing 2B (.1) AT4G32500 61 / 1e-10 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014410 [exp] 374 / 4e-134 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10021508 [exp] 284 / 2e-98 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10022609 [exp] 226 / 2e-76 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10014522 [exp] 80 / 2e-17 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 70 / 4e-14 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10033052 [exp] 63 / 1e-11 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10017765 [exp] 62 / 2e-11 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10034579 [exp] 62 / 4e-11 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10021814 [exp] 62 / 5e-11 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121500 [exp] 249 / 5e-85 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.016G097900 [exp] 246 / 1e-83 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2) Potri.001G295200 [exp] 68 / 2e-13 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 66 / 4e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 65 / 2e-12 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.017G006800 [exp] 61 / 1e-10 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.004G210100 [exp] 60 / 1e-10 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 59 / 2e-10 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.008G048400 [exp] 58 / 6e-10 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.001G130500 [exp] 57 / 6e-10 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10023911 pacid=23160653 polypeptide=Lus10023911 locus=Lus10023911.g ID=Lus10023911.BGIv1.0 annot-version=v1.0 ATGGCAGTTCACAGGGATGACCTAATGGACGAGGAAGAGAACGAGGAGGATAACGTCCTGTTTCAGGATGCGAACGCCGTCGATTTGGATCAGAACTTGC CCGAGCCGCTTCAGTCCATCCTCTCGGCAGCTCAATCCGGACATTCCGATGCACTCACGCAAGCCTTAGATAATTTTGATGGCAACATTGACGAACCGTT GGAGGATGGTGACACTGCTCTCCACCTAGTTTGTCTGTATGGACATTTCAGCTGTGCTAAGGTACTCTTGGAAAGGGGAGCAAATGTAGAGGTTAAAGAT GAAGATGGTGCAATTCCACTACATGATGCCTGTGCAGGAGGATATACTGAGATAGTGCAGCTTTTGCTCAGCCATGCTCAAAGTCCTGATTCTGTGAAGA GAATGCTTGAAACAGTCGACGATGAGGGTGATACTCCACTCCATCATGCTGCGAGAGGTGAACATAAGGAGATCGTAAACCTGTTGATGGCTTCTGGTGC TTCAGTGACTCGCACAAACTCGTATGGAAAGACTCCAAGCGAGCTGGCTGAACCAGGAACAGAAGTGAGGTCAATCCTGGAAGCCACTGCTTCATCCAAC TGA
AA sequence Show only first row Show all	>Lus10023911 pacid=23160653 polypeptide=Lus10023911 locus=Lus10023911.g ID=Lus10023911.BGIv1.0 annot-version=v1.0 MAVHRDDLMDEEENEEDNVLFQDANAVDLDQNLPEPLQSILSAAQSGHSDALTQALDNFDGNIDEPLEDGDTALHLVCLYGHFSCAKVLLERGANVEVKD EDGAIPLHDACAGGYTEIVQLLLSHAQSPDSVKRMLETVDDEGDTPLHHAARGEHKEIVNLLMASGASVTRTNSYGKTPSELAEPGTEVRSILEATASSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09890			Ankyrin repeat family protein ...		Lus10023911 [exp]	0	1
AT1G65032			unknown protein		Lus10020483 [exp]	2.8	0.7778
AT2G29540		ATRPAC14, ATRPC...	RNApolymerase 14 kDa subunit (...		Lus10016452 [exp]	4.7	0.7393
AT5G56940			Ribosomal protein S16 family p...		Lus10014281 [exp]	4.9	0.7557
AT2G18400			ribosomal protein L6 family pr...		Lus10014306 [exp]	6.6	0.7770
AT2G43780			unknown protein		Lus10035718 [exp]	6.9	0.7740
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Lus10021016 [exp]	9.8	0.7429
AT3G02950		AtTHO7	Tho complex subunit 7/Mft1p (....		Lus10012882 [exp]	10.6	0.7353
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10038195 [exp]	11.5	0.7178
AT1G32210		ATDAD1	DEFENDER AGAINST APOPTOTIC DEA...		Lus10010413 [exp]	14.3	0.7597
AT4G38370			Phosphoglycerate mutase family...		Lus10023935 [exp]	15.7	0.7355

Compare expression of checked genes

Lus10023911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.