Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28200 127 / 5e-35 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 126 / 8e-35 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G04390 108 / 2e-27 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 100 / 3e-24 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G37430 83 / 2e-19 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G53600 77 / 3e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G60580 78 / 1e-16 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G46090 74 / 6e-16 C2H2ZnF ZAT7 C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G02030 74 / 2e-15 C2H2ZnF C2H2-like zinc finger protein (.1) AT5G59820 72 / 3e-15 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022610 [exp] 152 / 3e-45 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 120 / 1e-33 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 105 / 5e-27 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10024428 [exp] 91 / 4e-22 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10023540 [exp] 91 / 2e-21 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 90 / 2e-21 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10038674 [exp] 92 / 4e-21 AT2G28200 162 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 88 / 4e-21 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023433 [exp] 80 / 7e-18 AT2G28710 117 / 1e-33 C2H2-type zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098100 [exp] 128 / 2e-35 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 124 / 9e-34 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 116 / 1e-30 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 115 / 3e-30 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 113 / 3e-30 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 107 / 3e-27 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 84 / 2e-19 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 84 / 2e-19 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.009G027700 [exp] 81 / 3e-18 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 80 / 5e-18 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10023912 pacid=23160794 polypeptide=Lus10023912 locus=Lus10023912.g ID=Lus10023912.BGIv1.0 annot-version=v1.0 ATGGTGATGGATCAATCAATGGTCGTGGACGGATTAACCCTTGACGTGGGTTGCTGTTCGGTCAAAGGTAAGCGGACCAAGCGCCAGAGGCCTCTGTCTC CTCTGCCGTTTCCCGGCGGTGATATTGTGACGAACAATCAGAGCTCTGCGGCGGAGAGTAGTTGTACGGTTGAAGAGGAAGATATGGCGAATTGCTTGAT TCTTCTCGCTCAGGGAGGACGTCAGCAGCTTCTGCGTCAAGAAGAAGAACCCAGGAAATTGTCGATTGCGTCGGATTCGAAACAGGTGGCGGCGGAGGAA GGGGCGGTGACGGTGGCGGAGCGAGGAGTGTTTGTTTATCAGTGCAAGACGTGCGAGAGGTGCTTTTCTTCGTTTCAAGCGTTGGGAGGACACAGAGCGA GTCACAAGAAGCCTAGGACGACCGATCAGGCGGATGTTGATCGTAAATTATCTTCTGGTGATCGGAAATTGAAGGAGGAGATTAATCGGGGGGAAGAACT CTCGCTTTCGTTGCGAATTGTGACACCGGCGGCGGTGAAGCCGAATAAGGTTCACGAATGTTCGATATGTGGAACGGGGTTCTCGTCGGGGCAGGCTTTG GGTGGTCATATGAGGAGGCACAGGACGGTGGTTCCGGCGACGTCGACGTCGGCGGCGGTGGTGGTGAGGAGCGGGTTGGAGTGGGATCTGAATCTTCCGG CGCCGGAAGAAGGGCGGGAATCAAATAAGTTTCGGTTTGCGTTCTCCTCGTCGTCGGCTTTTCCTTTGGTGGATTGCCATTACTGA
AA sequence Show only first row Show all	>Lus10023912 pacid=23160794 polypeptide=Lus10023912 locus=Lus10023912.g ID=Lus10023912.BGIv1.0 annot-version=v1.0 MVMDQSMVVDGLTLDVGCCSVKGKRTKRQRPLSPLPFPGGDIVTNNQSSAAESSCTVEEEDMANCLILLAQGGRQQLLRQEEEPRKLSIASDSKQVAAEE GAVTVAERGVFVYQCKTCERCFSSFQALGGHRASHKKPRTTDQADVDRKLSSGDRKLKEEINRGEELSLSLRIVTPAAVKPNKVHECSICGTGFSSGQAL GGHMRRHRTVVPATSTSAAVVVRSGLEWDLNLPAPEEGRESNKFRFAFSSSSAFPLVDCHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03510	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023912 [exp]	0	1
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	1.0	0.8295
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Lus10015919 [exp]	11.5	0.7926
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	12.5	0.7929
AT5G47520		AtRABA5a	RAB GTPase homolog A5A (.1)		Lus10000536 [exp]	12.6	0.7884
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10028039 [exp]	15.4	0.7474
AT1G30760			FAD-binding Berberine family p...		Lus10038445 [exp]	15.5	0.7588
AT1G03350			BSD domain-containing protein ...		Lus10029636 [exp]	16.5	0.8050
AT4G24805			S-adenosyl-L-methionine-depend...		Lus10013662 [exp]	24.0	0.7452
AT1G58170			Disease resistance-responsive ...		Lus10026176 [exp]	26.3	0.7713
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10037778 [exp]	27.9	0.7273

Compare expression of checked genes

Lus10023912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.