Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36830 336 / 2e-117 TIP1;1, GAMMA-TIP1, GAMMA-TIP TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) AT4G01470 333 / 2e-116 ATTIP1.3, GAMMA-TIP3, TIP1;3 tonoplast intrinsic protein 1;3 (.1) AT3G26520 317 / 6e-110 TIP1;2, SITIP, GAMMA-TIP2, TIP2 SALT-STRESS INDUCIBLE TONOPLAST INTRINSIC PROTEIN, tonoplast intrinsic protein 2 (.1) AT1G73190 255 / 2e-85 ALPHA-TIP, TIP3;1 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) AT1G17810 251 / 1e-83 BETA-TIP beta-tonoplast intrinsic protein (.1) AT3G16240 244 / 2e-81 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1) AT5G47450 237 / 2e-78 ATTIP2;3, DELTA-TIP3 DELTA-TONOPLAST INTRINSIC PROTEIN 3, ARABIDOPSIS THALIANA TONOPLAST INTRINSIC PROTEIN 2;3, tonoplast intrinsic protein 2;3 (.1) AT4G17340 231 / 3e-76 TIP2;2, DELTA-TIP2 tonoplast intrinsic protein 2;2 (.1) AT2G25810 218 / 4e-71 TIP4;1 tonoplast intrinsic protein 4;1 (.1) AT3G47440 144 / 3e-42 TIP5;1 tonoplast intrinsic protein 5;1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014411 [exp] 429 / 5e-154 AT2G36830 390 / 4e-139 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10022611 [exp] 403 / 7e-144 AT2G36830 403 / 5e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10021510 [exp] 399 / 2e-142 AT2G36830 402 / 9e-144 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Lus10005885 [exp] 341 / 2e-119 AT4G01470 395 / 1e-140 tonoplast intrinsic protein 1;3 (.1) Lus10040863 [exp] 338 / 3e-118 AT4G01470 394 / 2e-140 tonoplast intrinsic protein 1;3 (.1) Lus10003288 [exp] 308 / 2e-106 AT4G01470 388 / 6e-138 tonoplast intrinsic protein 1;3 (.1) Lus10036187 [exp] 246 / 7e-82 AT1G73190 382 / 4e-135 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10038324 [exp] 246 / 7e-82 AT1G73190 380 / 1e-134 ALPHA-TONOPLAST INTRINSIC PROTEIN, Aquaporin-like superfamily protein (.1) Lus10018256 [exp] 244 / 4e-81 AT1G17810 370 / 7e-131 beta-tonoplast intrinsic protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121700 [exp] 384 / 2e-136 AT2G36830 345 / 6e-121 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.016G098200 [exp] 382 / 8e-136 AT2G36830 354 / 1e-124 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.008G050700 [exp] 348 / 4e-122 AT4G01470 387 / 2e-137 tonoplast intrinsic protein 1;3 (.1) Potri.010G209900 [exp] 346 / 2e-121 AT4G01470 389 / 2e-138 tonoplast intrinsic protein 1;3 (.1) Potri.001G235300 [exp] 320 / 2e-111 AT4G01470 375 / 8e-133 tonoplast intrinsic protein 1;3 (.1) Potri.009G027200 [exp] 311 / 9e-108 AT4G01470 367 / 7e-130 tonoplast intrinsic protein 1;3 (.1) Potri.004G216500 [exp] 299 / 7e-103 AT4G01470 331 / 2e-115 tonoplast intrinsic protein 1;3 (.1) Potri.009G005400 [exp] 294 / 5e-101 AT2G36830 355 / 7e-125 TONOPLAST INTRINSIC PROTEIN 1;1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, gamma tonoplast intrinsic protein (.1) Potri.017G154800 [exp] 256 / 9e-86 AT1G17810 372 / 1e-131 beta-tonoplast intrinsic protein (.1) Potri.018G152100 [exp] 255 / 2e-85 AT1G17810 350 / 8e-123 beta-tonoplast intrinsic protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10023913 pacid=23160842 polypeptide=Lus10023913 locus=Lus10023913.g ID=Lus10023913.BGIv1.0 annot-version=v1.0 ATGCCTATCAGAAACATAGCAGTTGGCCACTACGGCGAGGCGACCCACCCGGATGCGATCCGGGCCGGGTTGGCCGAGTTCTTCTCCACTCTCATCTTCG TCTTCGCCGGTGAAGGCTCCAGTATGGCCTTCGCAAAGATGACTGACGGAGCGGCCAACAACCCTACAGGGCTTGTTGCCGCCGCCATCGCCCACGCCTT CGCTCTCTTCGTAGCCGTCTCAGTCGGAGCCAACATCTCCGGCGGCCACGTCAACCCCGCCGTCACCTTCGGCGCCTTCATCGGCGGAAACATCACCCTC TTCCGCGGGATTGTTTACTGGATCGCCCAGCTTCTCGGGTCCACTGTCGCTTGCTTGCTCCTCAAGTTCGTCACCGGCGGCCTCGAAACGGCCGCGTTTG GTCTTTCAGATGGCGTAGGAGTGTGGAACGCGGTCGTTTTGGAGATTGTGATGACGTTCGGACTAGTGTACACCGTGTACGCCACAGCGGTGGACCCCAA AAAAGGAGACTTGGGGACCATTGCCCCGCTGGCAATCGGTTTCATTGTTGGGGCCAACATTTTGATAGGTGGAGCCTTCGACGGGGCGTCGATGAACCCA GCTGTGTCGTTCGGACCGGCTTTGGTGAGCTGGAGCTGGAACAACCACTGGGTATACTGGGTTGGACCGTTGATCGGTGGCGGACTGGCCGGTTTAATTT ACGAGGTGATTTTCATCGGGTATGGAAACCACGAGCAGCTCCCGACCGCTGATTACTAG
AA sequence Show only first row Show all	>Lus10023913 pacid=23160842 polypeptide=Lus10023913 locus=Lus10023913.g ID=Lus10023913.BGIv1.0 annot-version=v1.0 MPIRNIAVGHYGEATHPDAIRAGLAEFFSTLIFVFAGEGSSMAFAKMTDGAANNPTGLVAAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFIGGNITL FRGIVYWIAQLLGSTVACLLLKFVTGGLETAAFGLSDGVGVWNAVVLEIVMTFGLVYTVYATAVDPKKGDLGTIAPLAIGFIVGANILIGGAFDGASMNP AVSFGPALVSWSWNNHWVYWVGPLIGGGLAGLIYEVIFIGYGNHEQLPTADY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10023913 [exp]	0	1
AT1G17200			Uncharacterised protein family...		Lus10042471 [exp]	1.4	0.9802
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	4.9	0.9645
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	4.9	0.9636
AT3G09870			SAUR-like auxin-responsive pro...		Lus10004014 [exp]	6.0	0.9565
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10009075 [exp]	6.6	0.9508
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	7.5	0.9584
AT1G14280		PKS2	phytochrome kinase substrate 2...		Lus10012831 [exp]	8.4	0.9574
AT2G48150		ATGPX4	glutathione peroxidase 4 (.1)		Lus10042692 [exp]	9.0	0.9266
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Lus10014411 [exp]	9.2	0.9445
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Lus10014850 [exp]	10.3	0.9050

Compare expression of checked genes

Lus10023913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.