Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25560 225 / 7e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 221 / 2e-70 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G18650 188 / 9e-58 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 162 / 8e-48 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G74770 117 / 7e-29 zinc ion binding (.1) AT1G18910 114 / 1e-27 zinc ion binding;zinc ion binding (.1) AT3G18290 112 / 3e-27 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012811 [exp] 191 / 9e-59 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 188 / 7e-58 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10042188 [exp] 107 / 8e-28 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10034346 [exp] 113 / 3e-27 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10005111 [exp] 111 / 1e-26 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10008628 [exp] 105 / 8e-25 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042190 [exp] 70 / 6e-13 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10008627 [exp] 61 / 5e-10 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10036664 [exp] 40 / 0.0002 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005700 [exp] 254 / 2e-83 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G121801 [exp] 254 / 2e-83 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 233 / 5e-75 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.008G205400 [exp] 185 / 1e-56 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 175 / 1e-52 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G122200 [exp] 117 / 7e-29 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 117 / 1e-28 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 109 / 4e-26 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 99 / 2e-22 AT1G74770 1199 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05495 [flax] [poplar] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Lus10023914 pacid=23160771 polypeptide=Lus10023914 locus=Lus10023914.g ID=Lus10023914.BGIv1.0 annot-version=v1.0 ATGGGGAGTGGGTTTGATTCTTCTGCTGAAGATTTCGGATTCGGTAGTTTCGGGTGTACGCATTACAGGAGAAGGTGCAAGATCAGAGCGCCATGTTGCA ACGAGATATTTGATTGCAGGCATTGCCATAATGACTCCAAGAACTCAATTGAAGTTGATTGCAATGATCGTCACGACATTCCTCGTCACCAACTGAAACT GGTCATTTGTTCTCTTTGTGACACTGAACAGAATGTTCAACAGCACTGCATCGAGTGTGGGGTTTGCATGGGGAAGTACTTTTGCTCCGAGTGCAAGTTC TTTGATGATGATGTCAGGCTCATACCTTACACATTCTTGTGTTTCTTTGGTTCTTACATTGTACTTTCTCTTTCAGTCTTTCTGCTTACGCAATGTAACT GTTTTATCACGTGTACTAGGTCTCGAAGCAACAGTATCATTGCAATGAATGTGGCATCTGCAGGTTTACTTCTGCACAATATCGCTTGCCTTTGCCATCT GACCATTTTGCAAGTCTGTGTTTCCTTTTTCACTCATGGTGTTTTCGTCGATATTTTATGCTGCAGAACCGGAGGGAAGGATAACTTCTTCCACTGTGAC AAATGTGGATGTTGCTATTCGAGGTCATTGAAGGATTCGCATAACTGTGTAGAAAGAGCAATGCACCACAATTGCCCCGTCTGCTTTGAGTTTCTGTTTG AGACAATGAAGGACATAACAGTCTTGCCCTGCGGACACACTATACATTTGGAATGTGTTAAACAGATGGAACGACATTGTCAATATTCTTGCCCGGTTTG CTCCAAGTCTTATTGTGATATGTCTAGTGTGTGGGAGAAACTTGATCAAGAGGTTGCTTCAACACCTATGCCACAGATTTATCAGGATAAGCTGGTCTGG ATTCTTTGCAACGACTGTGGAGAAACTTCAGAAGTAAGCTTCCATGTTTTAGCTCACAAGTGCCTCAACTGCAAGTCCTACAACACAAGACAAACGAGAG AAGACCATCAAGGATCGCGGAAATGA
AA sequence Show only first row Show all	>Lus10023914 pacid=23160771 polypeptide=Lus10023914 locus=Lus10023914.g ID=Lus10023914.BGIv1.0 annot-version=v1.0 MGSGFDSSAEDFGFGSFGCTHYRRRCKIRAPCCNEIFDCRHCHNDSKNSIEVDCNDRHDIPRHQLKLVICSLCDTEQNVQQHCIECGVCMGKYFCSECKF FDDDVRLIPYTFLCFFGSYIVLSLSVFLLTQCNCFITCTRSRSNSIIAMNVASAGLLLHNIACLCHLTILQVCVSFFTHGVFVDILCCRTGGKDNFFHCD KCGCCYSRSLKDSHNCVERAMHHNCPVCFEFLFETMKDITVLPCGHTIHLECVKQMERHCQYSCPVCSKSYCDMSSVWEKLDQEVASTPMPQIYQDKLVW ILCNDCGETSEVSFHVLAHKCLNCKSYNTRQTREDHQGSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22920			CHY-type/CTCHY-type/RING-type ...		Lus10023914 [exp]	0	1
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10015318 [exp]	3.2	0.8171
AT5G06440			unknown protein		Lus10021251 [exp]	7.3	0.7869
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	10.6	0.8099
					Lus10003592 [exp]	11.0	0.7676
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10017209 [exp]	12.4	0.8034
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10005927 [exp]	12.6	0.7811
AT2G33830			Dormancy/auxin associated fami...		Lus10025446 [exp]	12.8	0.7914
AT3G26740		CCL	CCR-like (.1)		Lus10012569 [exp]	15.3	0.7831
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	15.6	0.7935
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	17.0	0.7530

Compare expression of checked genes

Lus10023914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.